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Mechanisms That Shape Microbial Pangenomes [PDF]
Trends in Microbiology, 2021 Analyses of multiple whole-genome sequences from the same species have revealed that differences in gene content can be substantial, particularly in prokaryotes. Such variation has led to the recognition of pangenomes, the complete set of genes present in a species - consisting of core genes, present in all individuals, and accessory genes whose ...
Domingo-Sananes, MR, McInerney, JO
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Bovine Pangenome Consortium [PDF]
, 2023 The Bovine Pangenome Consortium is an international research consortium dedicated to the sequencing and assembly of bovid species for research applications. We are comprised of experts in the field of Genetics, Genomics, Bioinformatics and Animal Science
USDA ARS (17854841) +1 more
core
Methods and Developments in Graphical Pangenomics [PDF]
Journal of the Indian Institute of Science, 2021 Pangenomes are organized collections of the genomic information from related individuals or groups. Graphical pangenomics is the study of these pangenomes using graphical methods to identify and analyze genes, regions, and mutations of interest to an array of biological questions.
Joseph Outten, Andrew Warren
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StrainPanDA Pre-built pangenome database [PDF]
, 2021 Pre-built pangenome ...
yuxiang tan
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A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
BMC Biology, 2020 Background The gene content of a species largely governs its ecological interactions and adaptive potential. A species is therefore defined by both core genes shared between all individuals and accessory genes segregating presence-absence variation ...
Thomas Badet +4 more
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BMC Genomics, 2022 Background With the exponential growth of publicly available genome sequences, pangenome analyses have provided increasingly complete pictures of genetic diversity for many microbial species.
Jason C. Hyun +2 more
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, 2021 We constructed a melon pangenome based on 297 accessions comprising 168 Mb novel sequences and 4,325 novel genes. The non-reference genome sequences and annotated genes were retrieved.
xiangdong kong (11834456)
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Estimating Pangenomes with Roary [PDF]
Molecular Biology and Evolution, 2019 Abstract A description of the genetic makeup of a species based on a single genome is often insufficient because it ignores the variability in gene repertoire among multiple strains. The estimation of the pangenome of a species is a solution to this issue as it provides an overview of genes that are shared by all strains and genes that ...
Sitto, Farrah, Battistuzzi, Fabia U
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nf-core/pangenome: pangenome 1.1.0 - Schmuddlweddr [PDF]
<h2>What's Changed</h2> <ul> <li>Update from Master to add DOI by @subwaystation in https://github.com/nf-core/pangenome/pull/137</li> <li>Update modules gfaffix, MultiQC, samtools/faidx by @subwaystation in https ...
Simon Heumos +9 more
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nf-core/pangenome: pangenome 1.1.1 - LATÜRNICH [PDF]
<h2>What's Changed</h2> <ul> <li>bump pipeline version to 1.2.0dev - LATÜRNICH by @subwaystation in https://github.com/nf-core/pangenome/pull/181</li> <li>Important!
Simon Heumos +9 more
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