Results 11 to 20 of about 15,819 (203)

The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species

Genome Biology, 2023
The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies and a community-
Timothy P. L. Smith, Derek M. Bickhart, Didier Boichard, Amanda J. Chamberlain, Appolinaire Djikeng, Yu Jiang, Wai Y. Low, Hubert Pausch, Sebastian Demyda-Peyrás, James Prendergast, Robert D. Schnabel, Benjamin D. Rosen, Bovine Pangenome Consortium   +12 more
doaj   +2 more sources

Pangenome-scale mathematical modelling of ANAMMOX bacteria metabolism

, 2023
Removal of fixed nitrogen compounds such as ammonium and nitrite from wastewater is of critical importance for balancing the nitrogen cycle and protecting aquatic environments from eutrophication.
Roman Bielski (9400169), Ahsan Islam (4116055)   +1 more
core   +5 more sources

Crop pangenomes

Вавиловский журнал генетики и селекции, 2021
Progress in genome sequencing, assembly and analysis allows for a deeper study of agricultural plants’ chromosome structures, gene identif ication and annotation.
A. Yu. Pronozin, M. K. Bragina, E. A. Salina   +2 more
doaj   +1 more source

Protocol for post-processing of bacterial pangenome data using Pagoo pipeline

STAR Protocols, 2021
Summary: Multiple downstream analyses are necessary to interpret the output of bacterial pangenome reconstruction software. This requires integrating diverse kinds of genetic and phenotypic data, which to date are left to each user’s criterion.
Ignacio Ferrés, Gregorio Iraola
doaj   +1 more source

A review of the pangenome: how it affects our understanding of genomic variation, selection and breeding in domestic animals?

Journal of Animal Science and Biotechnology, 2023
As large-scale genomic studies have progressed, it has been revealed that a single reference genome pattern cannot represent genetic diversity at the species level.
Ying Gong, Yefang Li, Xuexue Liu, Yuehui Ma, Lin Jiang   +4 more
doaj   +1 more source

TARGET-MAGs-vs-INDEX-MAGs-PANGENOME

, 2020
This data pack is suitable for anvi'o v6.1 or later.This dataset contains anvi'o files for the pangenome shown in Figure 3B of Miyoshi and Miyoshi et al. (2020).To visualize this pangenome interactively please run,anvi-display-pan -p TARGET-MAGs-vs-INDEX-
A. Murat Eren (696829)
core   +1 more source

Construction and representation of human pangenome graphs

, 2023
As a single reference genome cannot possibly represent all the variation present across human individuals, pangenome graphs have been introduced to incorporate population diversity within a wide range of genomic analyses.
Dufresne, Yoann, Chikhi, Rayan, Andreace, Francesco, Lechat, Pierre   +3 more
core   +1 more source

Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

BMC Genomics, 2022
Background With the exponential growth of publicly available genome sequences, pangenome analyses have provided increasingly complete pictures of genetic diversity for many microbial species.
Jason C. Hyun, Jonathan M. Monk, Bernhard O. Palsson   +2 more
doaj   +1 more source

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici

BMC Biology, 2020
Background The gene content of a species largely governs its ecological interactions and adaptive potential. A species is therefore defined by both core genes shared between all individuals and accessory genes segregating presence-absence variation ...
Thomas Badet, Ursula Oggenfuss, Leen Abraham, Bruce A. McDonald, Daniel Croll   +4 more
doaj   +1 more source

MAG-01-vs-18-ISOLATES-PANGENOME

, 2020
This data pack is suitable for anvi'o v6.1 or later.This dataset contains anvi'o files for the pangenome shown in Figure 3C of Miyoshi and Miyoshi et al.
A. Murat Eren (696829)
core   +1 more source