Results 111 to 120 of about 1,556 (147)

Pangenomic Alignment: Strings plus Graphs

, 2023
The use of only one or a few reference genomes for DNA alignment is known to bias research results and medical diagnoses, but aligning against many reference genomes has been problematic. If we represent such a pangenomic reference as a set of strings, then each seed we find in a DNA read may occur in many of the genomes, so even reporting all those ...
openaire   +1 more source

Strain-level metagenomic profiling using pangenome graphs with PanTax. [PDF]

Genome Res
Zhang W, Liu Y, Li G, Xu J, Chen E, Schönhuth A, Luo X.   +6 more
europepmc   +1 more source

Interactive visualization and interpretation of pangenome graphs by linear reference-based coordinate projection and annotation integration. [PDF]

Genome Res
Miao Z, Yue JX.
europepmc   +1 more source

soibean: High-Resolution Taxonomic Identification of Ancient Environmental DNA Using Mitochondrial Pangenome Graphs. [PDF]

Mol Biol Evol
Vogel NA, Rubin JD, Pedersen AG, Sackett PW, Pedersen MW, Renaud G.   +5 more
europepmc   +1 more source

Insights into goatpox virus and sheeppox virus genomes from pangenome graphs

Downing T.
europepmc   +1 more source

Billi: Provably Accurate and Scalable Bubble Detection in Pangenome Graphs

Bhat SG, Mahajan D, Jain C.
europepmc   +1 more source

Annotation transfer in pangenome graphs

, 2023
openaire   +1 more source

From structural pangenomes to functional panomics in plants. [PDF]

Mol Biol Evol
Cochetel N, Cantu D.
europepmc   +1 more source

Accessing crop genetic diversity via pangenomics. [PDF]

Theor Appl Genet
MacNish TR, Kopalli V, Zanini SF, Snowdon RJ, Golicz AA, Edwards D.   +5 more
europepmc   +1 more source

Phylogeny-driven pangenome analysis uncovers the genomic landscape of domesticated and wild Armeniaca species. [PDF]

Hortic Res
Blanchard I, Bui QT, Mergez A, Denni S, Cornille A, Dufau I, Marande W, Groppi A, Decroocq S, Confais J, Duvaux L, Decroocq V, Linard B.   +12 more
europepmc   +1 more source