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A Roadmap for Genome-Based Phage Taxonomy [PDF]
Viruses, 2021 Bacteriophage (phage) taxonomy has been in flux since its inception over four decades ago. Genome sequencing has put pressure on the classification system and recent years have seen significant changes to phage taxonomy. Here, we reflect on the state of phage taxonomy and provide a roadmap for the future, including the abolition of the order ...
Dann Turner +2 more
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Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 2002
Marine phages are the most abundant biological entities in the oceans. They play important roles in carbon cycling through marine food webs, gene transfer by transduction and conversion of hosts by lysogeny. The handful of marine phage genomes that have been sequenced to date, along with prophages in marine bacterial genomes, and partial sequencing of ...
John H, Paul +3 more
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Marine phages are the most abundant biological entities in the oceans. They play important roles in carbon cycling through marine food webs, gene transfer by transduction and conversion of hosts by lysogeny. The handful of marine phage genomes that have been sequenced to date, along with prophages in marine bacterial genomes, and partial sequencing of ...
John H, Paul +3 more
openaire +2 more sources
The genomes and comparative genomics of Lactobacillus delbrueckii phages
Archives of Virology, 2011Lactobacillus delbrueckii phages are a great source of genetic diversity. Here, the genome sequences of Lb. delbrueckii phages LL-Ku, c5 and JCL1032 were analyzed in detail, and the genetic diversity of Lb. delbrueckii phages belonging to different taxonomic groups was explored.
Katja-Anneli, Riipinen +2 more
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Phage DNA Extraction, Genome Assembly, and Genome Closure
2023Bacteriophages, or more simply phages, are currently experiencing a renaissance in life science research for their roles in natural microbial communities, their potential use as antimicrobials, and biotechnological applications. In the modern era, one of the primary steps in phage characterization is obtaining the sequence of the complete genome; this ...
Justin, Boeckman +3 more
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Phage genome engineering with retrons
Nature BiotechnologyIlya Osterman +2 more
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Cell Host & Microbe
Deciphering the relationship between bacteriophage genotypes and phenotypes has been limited by a lack of genetic tractability and high-throughput screening methods. In this issue of Cell Host & Microbe, Chen et al. establish PhageMaP for generating phage mutant libraries to systematically interrogate phage gene function.
Shelby E. Andersen, Breck A. Duerkop
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Deciphering the relationship between bacteriophage genotypes and phenotypes has been limited by a lack of genetic tractability and high-throughput screening methods. In this issue of Cell Host & Microbe, Chen et al. establish PhageMaP for generating phage mutant libraries to systematically interrogate phage gene function.
Shelby E. Andersen, Breck A. Duerkop
openaire +2 more sources