Results 1 to 10 of about 23,538,309 (324)
Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis [PDF]
, 2012 We present an efficient phylogenetic reconstruction algorithm allowing insertions and deletions which provably achieves a sequence-length requirement (or sample complexity) growing polynomially in the number of taxa. Our algorithm is distance-based, that
Daskalakis, Constantinos +1 more
core +4 more sources
The complete chloroplast genome and phylogenetic analysis of Oxalis triangularis A.St.Hil., 1825 (Oxalidales: Oxalidaceae) and phylogenetic analysis [PDF]
Mitochondrial DNA. Part B. ResourcesOxalis triangularis, a perennial Oxalidaceae ornamental with biological functions, had its full cpDNA sequenced: a 152,115 bp circular genome with two 25,436 bp inverted repeat regions, an 83,309 bp large single-copy region and a 16,934 bp short single ...
Hongxiu Ji, Wang Meng
doaj +2 more sources
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes [PDF]
Molecular biology and evolution, 2021 Methods for evaluating the quality of genomic and metagenomic data are essential to aid genome assembly procedures and to correctly interpret the results of subsequent analyses.
M. Manni +4 more
semanticscholar +1 more source
Вестник Российского государственного медицинского университета, 2020 Twenty-eight published FAdVs hexon (Table 1) and fiber (Table 2) gene sequences were obtained from GenBank. Another two reference strains from different genus avian adenovirus was used which are Duck adenovirus (Atadenovirus) and Turkey adenovirus ...
Joachim Nwezeobi
semanticscholar +3 more sources
Root Digger: a root placement program for phylogenetic trees
BMC Bioinformatics, 2021 Background In phylogenetic analysis, it is common to infer unrooted trees. However, knowing the root location is desirable for downstream analyses and interpretation.
Ben Bettisworth, Alexandros Stamatakis
doaj +1 more source
Mitochondrial DNA. Part B. Resources, 2021 We determined a complete mitochondrial genome of Episoriculus leucops. This mitogenome is a circular molecule with 16,838 bp in length, containing 13 protein-coding genes, 22 transfer RNA genes (tRNA), and two ribosomal RNA genes (rRNA).
Dan Chen +4 more
doaj +1 more source
Acta Societatis Botanicorum Poloniae, 2023 Lycium barbarum L. ( L. barbarum ), an important medicinal and food crop from the Solanaceae family, is known for excellent tolerance to saline–alkaline and drought stresses. Therefore, it has significant research and application value.
Cuiping Guan +4 more
doaj +1 more source
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Bioinform., 2014 Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace.
A. Stamatakis
semanticscholar +1 more source
A Comprehensive Phylogenetic Analysis of Deadenylases
Evolutionary Bioinformatics, 2013 Deadenylases catalyze the shortening of the poly(A) tail at the messenger ribonucleic acid (mRNA) 3′-end in eukaryotes. Therefore, these enzymes influence mRNA decay, and constitute a major emerging group of promising anti-cancer pharmacological targets.
Athanasia Pavlopoulou +3 more
doaj +2 more sources
Molecular and Phylogenetic Analysis of Sheep Pox Virus in Iraq
Journal of Pure and Applied Microbiology, 2018 Sheep and goat pox (SGPX) are systemic transmissible viral diseases characterized mainly by skin and internal lesions. This work aimed to provide the first molecular detection of sheep pox virus (SPV) in Iraq.
Mohammed J. Muhaidi +2 more
doaj +1 more source