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Information and Phylogenetic Systematic Analysis [PDF]
Information, 2015 Information in phylogenetic systematic analysis has been conceptualized, defined, quantified, and used differently by different authors. In this paper, we start with the Shannon Uncertainty Measure information measure I, applying it to cladograms ...
Walter Craig, Jonathon Stone
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Current Biology, 1997 The main thrust of David Hillis's Perspective about historical and current systematic studies (11 Apr., p. [218][1]) appears to be the promotion of the application of statistical procedures to phylogenetic inference, especially those using the maximum likelihood approach.
Andrew V. Z. Brower +2 more
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Phylogenetic Factor Analysis [PDF]
Systematic Biology, 2017 51 pages (42 main, 9 supplemental), 9 figures (5 main, 4 supplemental), 4 tables (2 main, 2 supplemental), submitted to Systematic ...
Tolkoff, Max R. +4 more
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Root Digger: a root placement program for phylogenetic trees
BMC Bioinformatics, 2021 Background In phylogenetic analysis, it is common to infer unrooted trees. However, knowing the root location is desirable for downstream analyses and interpretation.
Ben Bettisworth, Alexandros Stamatakis
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Mitochondrial DNA. Part B. Resources, 2021 We determined a complete mitochondrial genome of Episoriculus leucops. This mitogenome is a circular molecule with 16,838 bp in length, containing 13 protein-coding genes, 22 transfer RNA genes (tRNA), and two ribosomal RNA genes (rRNA).
Dan Chen +4 more
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Phylogenetic analysis of the spirochetes [PDF]
Journal of Bacteriology, 1991 The 16S rRNA sequences were determined for species of Spirochaeta, Treponema, Borrelia, Leptospira, Leptonema, and Serpula, using a modified Sanger method of direct RNA sequencing. Analysis of aligned 16S rRNA sequences indicated that the spirochetes form a coherent taxon composed of six major clusters or groups. The first group, termed the treponemes,
B J, Paster +9 more
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Similar Microbial Communities Found on Two Distant Seafloor Basalts. [PDF]
, 2015 The oceanic crust forms two thirds of the Earth's surface and hosts a large phylogenetic and functional diversity of microorganisms. While advances have been made in the sedimentary realm, our understanding of the igneous rock portion as a microbial ...
Chong, Lauren S +3 more
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Molecular and Phylogenetic Analysis of Sheep Pox Virus in Iraq
Journal of Pure and Applied Microbiology, 2018 Sheep and goat pox (SGPX) are systemic transmissible viral diseases characterized mainly by skin and internal lesions. This work aimed to provide the first molecular detection of sheep pox virus (SPV) in Iraq.
Mohammed J. Muhaidi +2 more
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Jumpstarting phylogenetic analysis
International Journal of Bioinformatics Research and Applications, 2006 Phylogenetic analysis is a central tool in studies of comparative genomics. When a new region of DNA is isolated and sequenced, researchers are often forced to throw away months of computation on an existing phylogeny of homologous sequences in order to incorporate this new sequence.
Jesse Mecham +5 more
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Phylogenetic Analysis of Gene Expression [PDF]
Integrative and Comparative Biology, 2013 14 pages, 4 ...
Dunn, Casey W., Luo, Xi, Wu, Zhijin
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