Results 1 to 10 of about 23,697,520 (361)

Phylogenetic Analysis [PDF]

Вестник Российского государственного медицинского университета, 2020
Twenty-eight published FAdVs hexon (Table 1) and fiber (Table 2) gene sequences were obtained from GenBank. Another two reference strains from different genus avian adenovirus was used which are Duck adenovirus (Atadenovirus) and Turkey adenovirus ...
Joachim Nwezeobi
semanticscholar   +6 more sources

A Comprehensive Phylogenetic Analysis of Deadenylases [PDF]

Evolutionary Bioinformatics, 2013
Deadenylases catalyze the shortening of the poly(A) tail at the messenger ribonucleic acid (mRNA) 3′-end in eukaryotes. Therefore, these enzymes influence mRNA decay, and constitute a major emerging group of promising anti-cancer pharmacological targets.
Athanasia Pavlopoulou, Dimitrios Vlachakis, Nikolaos A.A. Balatsos, Sophia Kossida   +3 more
doaj   +5 more sources

The complete chloroplast genome and phylogenetic analysis of Oxalis triangularis A.St.Hil., 1825 (Oxalidales: Oxalidaceae) and phylogenetic analysis [PDF]

Mitochondrial DNA. Part B. Resources
Oxalis triangularis, a perennial Oxalidaceae ornamental with biological functions, had its full cpDNA sequenced: a 152,115 bp circular genome with two 25,436 bp inverted repeat regions, an 83,309 bp large single-copy region and a 16,934 bp short single ...
Hongxiu Ji, Wang Meng
doaj   +2 more sources

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes [PDF]

Molecular biology and evolution, 2021
Methods for evaluating the quality of genomic and metagenomic data are essential to aid genome assembly procedures and to correctly interpret the results of subsequent analyses.
M. Manni, M. Berkeley, M. Seppey, Felipe A. Simão, E. Zdobnov   +4 more
semanticscholar   +1 more source

Root Digger: a root placement program for phylogenetic trees

BMC Bioinformatics, 2021
Background In phylogenetic analysis, it is common to infer unrooted trees. However, knowing the root location is desirable for downstream analyses and interpretation.
Ben Bettisworth, Alexandros Stamatakis
doaj   +1 more source

The complete mitochondrial genome of long-tailed red-toothed shrew (Episoriculus leucops) and implication of phylogenetic status

Mitochondrial DNA. Part B. Resources, 2021
We determined a complete mitochondrial genome of Episoriculus leucops. This mitogenome is a circular molecule with 16,838 bp in length, containing 13 protein-coding genes, 22 transfer RNA genes (tRNA), and two ribosomal RNA genes (rRNA).
Dan Chen, Boxin Qin, Fei Xie, Qiong Wang, Shunde Chen   +4 more
doaj   +1 more source

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem [PDF]

, 2012
A nearly complete genome sequence of Candidatus ‘Acetothermum autotrophicum’, a presently uncultivated bacterium in candidate division OP1, was revealed by metagenomic analysis of a subsurface thermophilic microbial mat community.
A Stamatakis, A Teske, AK Kaster, AL Brioukhanov, Atsushi Toyoda, AY Mulkidjanian, B Boussau, D Wu, DJ Tobler, DS Kelley, E Biegel, E Biegel, E Pierce, EF DeLong, EG Nisbert, F Nikitin, FD Ciccarelli, G Proskurowski, G Wächtershäuser, Gab-Joo Chee, H Hirayama, H Kimura, H Noguchi, H Takami, H Takami, H Takami, Hideki Noguchi, Hideto Takami, I Uchiyama, I Uchiyama, Ikuo Uchiyama, JA Baross, Jack Anthony Gilbert, JB Corliss, JR Torre, K Takai, K Takai, K Takai, KC Costa, Ken Takai, M Toei, M Wu, M Wu, Masahira Hattori, MB Scott, MS Rappé, N Saitou, O White, P Hugenholtz, R Caspi, R Chenna, RF Say, RT Thauer, S Guindon, S Kato, Shinro Nishi, T Murata, T Nunoura, T Nunoura, T Sakiyama, T Shibuya, Takehiko Itoh, Takuro Nunoura, TM Lowe, V Müller, W Martin, W Martin, W Martin, Wataru Arai, Yoshihiro Takaki   +69 more
core   +7 more sources

Characterization and phylogenetic analysis of the complete mitochondrial genome of a unique economic plant Lycium barbarum L.

Acta Societatis Botanicorum Poloniae, 2023
Lycium barbarum L. ( L. barbarum ), an important medicinal and food crop from the Solanaceae family, is known for excellent tolerance to saline–alkaline and drought stresses. Therefore, it has significant research and application value.
Cuiping Guan, Xiang Li, Wenlan Mu, Hong Mu, Shujuan Yang   +4 more
doaj   +1 more source

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Bioinform., 2014
Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace.
A. Stamatakis
semanticscholar   +1 more source

Molecular and Phylogenetic Analysis of Sheep Pox Virus in Iraq

Journal of Pure and Applied Microbiology, 2018
Sheep and goat pox (SGPX) are systemic transmissible viral diseases characterized mainly by skin and internal lesions. This work aimed to provide the first molecular detection of sheep pox virus (SPV) in Iraq.
Mohammed J. Muhaidi, Mohammed A. Hamad, Noor N. Al-hayani   +2 more
doaj   +1 more source