Palaeoproteomic Deconvolution of Physical and Genetic Collagen Mixtures
ClassiCOL_v2 uses a novel “peptide patching” framework that treats any collagen sample as a patchwork of peptide sequences derived from phylogenetically related species. This allows the algorithm to simultaneously resolve two previously intractable problems: multi‐species samples and/or database deficiencies.
Ian Engels +12 more
wiley +1 more source
Plants That Evolved Under High Phylogenetic Diversity Have Higher Invasion Success, Particularly in Undisturbed Communities. [PDF]
Brian JI +5 more
europepmc +1 more source
Coexisting DCIS and IDC samples are profiled using spatial transcriptomics, single‐cell RNA sequencing, and single‐cell DNA sequencing. Integrative multi‐omics analysis reveals distinct malignant epithelial and microenvironmental features between DCIS and IDC, which are further validated using Xenium and multiplex immunohistochemistry.
Ning Zhang +18 more
wiley +1 more source
Phylogenetic diversity stabilizes community biomass
Aims: The relationship between biodiversity and ecological stability is a long-standing issue in ecology. Current diversity–stability studies, which have largely focused on species diversity, often report an increase in the stability of aggregate ...
Daya, Poonim +3 more
core
Incidence, molecular characterization and phylogenetic diversity of phytoplasmas associated with brinjal little leaf disease in Maharashtra and Karnataka, India. [PDF]
Bhalerao S +4 more
europepmc +1 more source
Thermal Shifts Dominate Single‐Gene Responses to Transcription‐Targeting Antibiotics
Thermal shifts reshape bacterial responses to transcription‐targeting antibiotics. In E. coli, temperature can dominate antibiotic‐induced genome‐wide expression, particularly outside 30°C–39°C, through changes in adenosine triphosphate (ATP), nucleoid organization, and drug‐target engagement.
Rahul Jagadeesan +5 more
wiley +1 more source
Identifying the exposure of taxonomic, functional, and phylogenetic diversity of steppe birds to renewable energy development. [PDF]
Medrano-Vizcaíno P +10 more
europepmc +1 more source
The IgLec gene family generates both protein‐coding antiviral effectors and non‐coding transcripts. Upon viral infection, non‐coding transcripts are preferentially targeted by viral miR‐N48, thereby buffering protein‐coding isoforms from repression. Depletion of these decoy transcripts compromises antiviral defense, revealing a non‐coding RNA‐mediated ...
Ying Huang +5 more
wiley +1 more source
Increases in species richness cause decreases in phylogenetic diversity in Mediterranean and Temperate plant assemblages. [PDF]
Luzuriaga AL +5 more
europepmc +1 more source
Sarbecovirus ORF9b recruits host phosphatase PPM1A to suppress innate immunity through dual mechanisms. PPM1A directly dephosphorylates ORF9b to sustain its activity and indirectly downregulates STAT2 phosphorylation to impair interferon signaling. Pharmacological inhibition of PPM1A restores antiviral responses and limits sarbecovirus replication ...
Lixiang Xie +24 more
wiley +1 more source

