Open Reading Frame Phylogenetic Analysis on the Cloud
International Journal of Genomics, 2013 Phylogenetic analysis has become essential in researching the evolutionary relationships between viruses. These relationships are depicted on phylogenetic trees, in which viruses are grouped based on sequence similarity.
Che-Lun Hung, Chun-Yuan Lin
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Reconstructing Phylogeny by Aligning Multiple Metabolic Pathways Using Functional Module Mapping
Molecules, 2018 Comparison of metabolic pathways provides a systematic way for understanding the evolutionary and phylogenetic relationships in systems biology. Although a number of phylogenetic methods have been developed, few efforts have been made to provide a ...
Yiran Huang +4 more
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Barcoding and Phylogenetic Inferences in Nine Mugilid Species (Pisces, Mugiliformes) [PDF]
Animal Systematics, Evolution and Diversity, 2013 Accurate identification of fish and fish products, from eggs to adults, is important in many areas. Grey mullets of the family Mugilidae are distributed worldwide and inhabit marine, estuarine, and freshwater environments in all tropical and temperate ...
Neonila Polyakova +2 more
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Phylogenetic relationships of the Wolbachia of nematodes and arthropods [PDF]
, 2006 Wolbachia are well known as bacterial symbionts of arthropods, where they are reproductive parasites, but have also been described from nematode hosts, where the symbiotic interaction has features of mutualism.
Claire Conlon +7 more
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SICLE: A high-throughput tool for extracting evolutionary relationships from phylogenetic trees
, 2016 We present the phylogeny analysis software SICLE (Sister Clade Extractor), an easy-to-use, high- throughput tool to describe the nearest neighbors to a node of interest in a phylogenetic tree as well as the support value for the relationship.
DeBlasio, Dan, Wiscaver, Jennifer
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Eggshell pigment composition covaries with phylogeny but not with life history or with nesting ecology traits of British passerines [PDF]
, 2015 No single hypothesis is likely to explain the diversity in eggshell coloration and patterning across birds, suggesting that eggshell appearance is most likely to have evolved to fulfill many nonexclusive functions.
Brulez, Kaat +9 more
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New Mitochondrial Genomes of Ithonidae (Neuroptera) and Higher Phylogenetic Implications
InsectsIthonidae (moth lacewings) are an enigmatic, small family of the insect order Neuroptera (lacewings). Its phylogenetic position within Neuroptera and internal subfamily relationships remain unresolved.
Ruyue Zhang +4 more
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Neogastropod phylogenetic relationships based on entire mitochondrial genomes
BMC Evolutionary Biology, 2009 Background The Neogastropoda is a highly diversified group of predatory marine snails (Gastropoda: Caenogastropoda). Traditionally, its monophyly has been widely accepted based on several morphological synapomorphies mostly related with the digestive ...
Zardoya Rafael +2 more
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Phylogenetic diversity and biodiversity indices on phylogenetic networks
, 2018 In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their ...
Fischer, Mareike, Wicke, Kristina
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Molecular bases of circadian magnesium rhythms across eukaryotes
FEBS Letters, EarlyView.Circadian rhythms in intracellular [Mg2+] exist across eukaryotic kingdoms. Central roles for Mg2+ in metabolism suggest that Mg2+ rhythms could regulate daily cellular energy and metabolism. In this Perspective paper, we propose that ancestral prokaryotic transport proteins could be responsible for mediating Mg2+ rhythms and posit a feedback model ...
Helen K. Feord, Gerben van Ooijen
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