Results 41 to 50 of about 444,347 (303)

SICLE: A high-throughput tool for extracting evolutionary relationships from phylogenetic trees

, 2016
We present the phylogeny analysis software SICLE (Sister Clade Extractor), an easy-to-use, high- throughput tool to describe the nearest neighbors to a node of interest in a phylogenetic tree as well as the support value for the relationship.
DeBlasio, Dan, Wiscaver, Jennifer
core   +2 more sources

Bacteria and Fungi Synergistically Reprogram Flavonoid Metabolites in the Pericarp of Citrus Reticulata 'Chachi' During Storage

Advanced Science, EarlyView.
The authors employed widely targeted metabolomics, microbial amplicon sequencing, and fermentation assays to investigate the microbiome 's influence on PCRC 's (pericarp of Citrus reticulata ' Chachi ') flavonoid profile over 0–19 years of storage. Based on the correlation analysis, solid‐state and liquid‐state fermentation, and catalytic activity ...
Jianmu Su, Sisheng Zhang, Lidi Liang, Haiyi Bai, Mei Bai, Hanjun He, Yayu Wang, Huan Liu, Xiangxiu Liang, Yu Sun, Hong Wu   +10 more
wiley   +1 more source

Increasing Taxa Sampling Provides New Insights on the Phylogenetic Relationship Between Eriobotrya and Rhaphiolepis

Frontiers in Genetics, 2022
Eriobotrya (Rosaceae) is an economically important genus with around 30 species. It is widely distributed in tropical and warm temperate regions of Asia, with most of its species in China, Myanmar, and Vietnam.
Zhanghong Dong, Shaohong Qu, Sven Landrein, Wen-Bin Yu, Jing Xin, Wenzhi Zhao, Yu Song, Yunhong Tan, Yunhong Tan, Peiyao Xin   +9 more
doaj   +1 more source

Phylogenetic relationships of Indian caecilians (Amphibia: Gymnophiona) inferred from mitochondrial rRNA gene sequences [PDF]

, 2002
India has a diverse caecilian fauna, including representatives of three of the six currently recognized families, the Caeciliidae, Ichthyophiidae, the endemic Uraeotyphlidae, but previous molecular phylogenetic studies of caecilians have not included ...
Benson, Bernard L Cohen, Bossuyt, Bremer, Duellman, Faith, Feller, Felsenstein, Hass, Hedges, Hillis, Hillis, Jenkins, Jonathan A. Sheps, Kocher, Kumar, Maddison, Mark Wilkinson, Nei, Nussbaum, Nussbaum, Nussbaum, Nussbaum, Nussbaum, O'Keefe, Oommen V Oommen, Pillai, Ramaswami, Robinson, Sambrook, Savage, Smith, Templeton, Thorley, Thorley, Wake, Wilkinson, Wilkinson, Wilkinson, Wilkinson   +39 more
core   +2 more sources

Thermal Plasticity is Regulated by a Key MicroRNA During Range Expansion of an Invasive Fruit Fly

Advanced Science, EarlyView.
Populations at the invasion front of Bactrocera dorsalis adapt through reduced phenotypic and gene expression plasticity, a phenomenon likely to be driven by genetic assimilation. We identify a key miRNA‐mediated regulatory axis, in which miR‐276b post‐transcriptionally represses thw, a conserved chitin‐binding gene critical to the cold‐tolerance ...
Yan Zhao, Juntao Hu, Juan Du, Shaokun Guo, Youming Hou, Zhihong Li   +5 more
wiley   +1 more source

Student News [PDF]

, 2018
Calyptrates are a megadiverse, actively radiating, group of dipterans, which are widely spread and abundant in nearly all terrestrial environments. Despite huge diversity and economic importance, their phylogeny is far from resolved.
Gisondi, S.
core  

Phylogenetic relationships in the family Alloherpesviridae [PDF]

Diseases of Aquatic Organisms, 2009
Phylogenetic relationships among herpesviruses (HVs) of mammals, birds, and reptiles have been studied extensively, whereas those among other HVs are relatively unexplored. We have reconstructed the phylogenetic relationships among 13 fish and amphibian HVs using maximum likelihood and Bayesian analyses of amino acid sequences predicted from parts of ...
Waltzek, T.B., Kelley, G.O., Alfaro, M.E., Kurobe, T., Davison, A.J., Hedrick, R.P.   +5 more
openaire   +3 more sources

Phylogenetic Relationship Among Brackishwater Vibrio Species [PDF]

Evolutionary Bioinformatics, 2020
Vibriosis is regarded as an important disease of penaeid shrimps affecting larvae in hatcheries. Among the Vibrio species, Vibrio parahaemolyticus, Vibrio vulnificus, Vibrio furnissii, Vibrio campbellii, Vibrio harveyi, Vibrio alginolyticus, and Vibrio anguillarum are often associated with diseases in finfish and shellfish of brackishwater ecosystem ...
J Ashok Kumar, K Vinaya Kumar, S Avunje, V Akhil, S Ashok, Sujeet Kumar, B Sivamani, Monendra Grover, Anil Rai, SV Alavandi, KK Vijayan   +10 more
openaire   +2 more sources

Highly Resolved Community Sewage Metagenomics Unveiling Landscape and Transmission Patterns of Antibiotic Resistome in Hong Kong Populations

Advanced Science, EarlyView.
A large‐scale, high‐resolution antimicrobial resistance (AMR) surveillance in Hong Kong community sewage combining short‐ and long‐read sequencing. The resistome profile is comprehensively characterized, and this upstream sampling strategy demonstrated superiority in reflecting the human gut resistome.
Jiahui Ding, Mengying Wang, Xiaoqing Xu, Dou Wang, Xi Chen, Shuxian Li, Xiawan Zheng, You Che, Yu Deng, Tommy T. Y. Lam, Liguan Li, Tong Zhang   +11 more
wiley   +1 more source

Neogastropod phylogenetic relationships based on entire mitochondrial genomes

BMC Evolutionary Biology, 2009
Background The Neogastropoda is a highly diversified group of predatory marine snails (Gastropoda: Caenogastropoda). Traditionally, its monophyly has been widely accepted based on several morphological synapomorphies mostly related with the digestive ...
Zardoya Rafael, Grande Cristina, Cunha Regina L   +2 more
doaj   +1 more source