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Phylogenetic Trees in Bioinformatics
Genetic data is often used to infer evolutionary relationships among a collection of viruses, bacteria, animal or plant species, or other operational taxonomic units (OTU). A phylogenetic tree depicts such relationships and provides a visual representation of the estimated branching order of the OTUs.
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A simple hierarchical model for heterogeneity in the evolutionary correlation on a phylogenetic tree. [PDF]
Revell LJ, Toyama KS, Mahler DL.
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Phylogenetic Trees Made Easy: A How-To Manual for Molecular Biologists [PDF]
Frank Wright
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Single-cell mutation calling and phylogenetic tree reconstruction with loss and recurrence. [PDF]
Kuipers J, Singer J, Beerenwinkel N.
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Automated ortholog inference from phylogenetic trees and calculation of orthology reliability [PDF]
Christian E. V. Storm+1 more
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RAxML Grove: an empirical phylogenetic tree database. [PDF]
Höhler D+4 more
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Bounding the softwired parsimony score of a phylogenetic network [PDF]
In comparison to phylogenetic trees, phylogenetic networks are more suitable to represent complex evolutionary histories of species whose past includes reticulation such as hybridisation or lateral gene transfer. However, the reconstruction of phylogenetic networks remains challenging and computationally expensive due to their intricate structural ...
arxiv
Self-Organized Criticality in Phylogenetic-Like Tree Growths
N. Vandewalle, Marcel Ausloos
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Signatures of Random and Selective Mass Extinctions in Phylogenetic Tree Balance [PDF]
Stephen B. Heard, Arne Ø. Mooers
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