Results 1 to 10 of about 495,194 (321)
Microorganisms, 2019 Massive sequencing projects executed in Saccharomyces cerevisiae have revealed in detail its population structure. The recent “1002 yeast genomes project” has become the most complete catalogue of yeast genetic diversity and a powerful ...
Manuel Villalobos-Cid +6 more
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Gene tree reconciliation: new developments in Bayesian concordance analysis with BUCKy [PDF]
, 2010 When phylogenetic trees inferred from different genes are incongruent, several methods are available to reconcile gene trees and extract the shared phylogenetic information from the sequence data. Bayesian Concordance Analysis, implemented in BUCKy, aims
Bret R. Larget +3 more
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Building a Robust, Densely-Sampled Spider Tree of Life for Ecosystem Research
Diversity, 2020 Phylogenetic relatedness is a key diversity measure for the analysis and understanding of how species and communities evolve across time and space.
Nuria Macías-Hernández +11 more
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Stochastic Safety Radius on UPGMA
Algorithms, 2022 Unweighted Pair Group Method with Arithmetic Mean (UPGMA) is one of the most popular distance-based methods to reconstruct an equidistant phylogenetic tree from a distance matrix computed from an alignment of sequences.
Ruriko Yoshida +2 more
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A novel approach to phylogenetic tree construction using stochastic optimization and clustering
BMC Bioinformatics, 2006 Background The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational biology.
Pan Yi, Chen Yixin, Qin Ling, Chen Ling
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Graph-based method for constructing consensus trees [PDF]
BIO Web of ConferencesA consensus tree is a phylogenetic tree that synthesizes a given collection of phylogenetic trees, all of which share the same leaf labels but may have different topologies, typically obtained through bootstrapping.
Torquet Elio +2 more
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PTree: pattern-based, stochastic search for maximum parsimony phylogenies [PDF]
PeerJ, 2013 Phylogenetic reconstruction is vital to analyzing the evolutionary relationship of genes within and across populations of different species. Nowadays, with next generation sequencing technologies producing sets comprising thousands of sequences, robust ...
Ivan Gregor +2 more
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The Future of Systematics: Tree-Thinking Without the Tree [PDF]
, 2012 Phylogenetic trees are meant to represent the genealogical history of life and apparently derive their justification from the existence of the tree of life and the fact that evolutionary processes are tree-like.
Velasco, Joel D.
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Plant DNA barcodes and assessment of phylogenetic community structure of a tropical mixed dipterocarp forest in Brunei Darussalam (Borneo). [PDF]
PLoS ONE, 2017 DNA barcoding is a fast and reliable tool to assess and monitor biodiversity and, via community phylogenetics, to investigate ecological and evolutionary processes that may be responsible for the community structure of forests.
Jacqueline Heckenhauer +7 more
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iScience, 2019 Summary: Recent availability of biodiversity data resources has enabled an unprecedented ability to estimate phylogenetically based biodiversity metrics over broad scales.
Julie M. Allen +13 more
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