Results 41 to 50 of about 2,113,711 (315)
Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses. [PDF]
, 2016 BackgroundFungi play critical roles in many ecosystems, cause serious diseases in plants and animals, and pose significant threats to human health and structural integrity problems in built environments.
Bolyen, Evan +8 more
core +2 more sources
IEEE journal of biomedical and health informatics, 2020 Accurate prediction of the host phenotype from a metagenomic sample and identification of the associated microbial markers are important in understanding potential host-microbiome interactions related to disease initiation and progression.
Derek Reiman +3 more
semanticscholar +1 more source
Rearrangement operations on unrooted phylogenetic networks
Theory and Applications of Graphs, 2019 Rearrangement operations transform a phylogenetic tree into another one and hence induce a metric on the space of phylogenetic trees. Popular operations for unrooted phylogenetic trees are NNI (nearest neighbour interchange), SPR (subtree prune and ...
Remie Janssen, Jonathan Klawitter
doaj +1 more source
Unique perfect phylogeny is NP-hard [PDF]
, 2010 We answer, in the affirmative, the following question proposed by Mike Steel as a $100 challenge: "Is the following problem NP-hard? Given a ternary phylogenetic X-tree T and a collection Q of quartet subtrees on X, is T the only tree that displays Q ?
Habib, Michel, Stacho, Juraj
core +1 more source
A new resolution function to evaluate tree shape statistics.
PLoS ONE, 2019 Phylogenetic trees are frequently used in biology to study the relationships between a number of species or organisms. The shape of a phylogenetic tree contains useful information about patterns of speciation and extinction, so powerful tools are needed ...
Maryam Hayati +2 more
doaj +1 more source
Understanding the tree of life: an overview of tree-reading skill frameworks
Evolution: Education and Outreach, 2019 Diagrammatic depictions of evolutionary relationships play an increasingly important role in scientific and educational literature. Reading evolutionary trees is seen as a major challenge for biologists in learning about evolution and its applications in
Thilo Schramm +2 more
doaj +1 more source
Botanical journal of the Linnean Society, 2020 The field of systematics is experiencing a new molecular revolution driven by the increased availability of high-throughput sequencing technologies.
Tamara Villaverde +22 more
semanticscholar +1 more source
Conflicting phylogenetic signals in plastomes of the tribe Laureae (Lauraceae) [PDF]
PeerJ, 2020 Background Gene tree discordance is common in phylogenetic analyses. Many phylogenetic studies have excluded non-coding regions of the plastome without evaluating their impact on tree topology. In general, plastid loci have often been treated as a single
Tian-Wen Xiao +5 more
doaj +2 more sources
The Fair Proportion is a Shapley Value on phylogenetic networks too
, 2018 The Fair Proportion of a species in a phylogenetic tree is a very simple measure that has been used to assess its value relative to the overall phylogenetic diversity represented by the tree.
Coronado, Tomás M. +2 more
core +1 more source
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
bioRxiv, 2018 Motivation Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture, and medicine.
Alexey M. Kozlov +4 more
semanticscholar +1 more source