Results 61 to 70 of about 2,113,711 (315)

Taxonomic classification of genus Aeromonas using open reading frame-based binarized structure network analysis

Fujita Medical Journal
Objectives: Taxonomic assignment based on whole-genome sequencing data facilitates clear demarcation of species within a complex genus. Here, we applied a unique pan-genome phylogenetic method, open reading frame (ORF)-based binarized structure network ...
Aki Sakurai, Masahiro Suzuki, Kengo Hayashi, Yohei Doi   +3 more
doaj   +1 more source

Aegilops tauschii Coss. molecular phylogeny in comparison with proteins electrophoretic polymorphism

Acta Biologica Sibirica, 2023
In the case of Aegilops tauschii the comparison of intraspecies molecular phylogeny based on DNA sequences of nuclear gene Got2 with electrophoretic polymorphism of allozymes and hystone H1 proteins is actually a comparison of the one detailed ...
Alexander J. Dudnikov
doaj   +1 more source

Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs

, 2017
We present kleuren, a novel assembly-free method to reconstruct phylogenetic trees using the Colored de Bruijn Graph. kleuren works by constructing the Colored de Bruijn Graph and then traversing it, finding bubble structures in the graph that provide ...
Bodily, Paul M., Bybee, Seth M., Clement, Mark J., Crandall, Keith A., Fujimoto, M. Stanley, Lyman, Cole A., Snell, Quinn, Suvorov, Anton   +7 more
core   +1 more source

Evolutionary dynamics of the chloroplast genome in Daphne (Thymelaeaceae): comparative analysis with related genera and insights into phylogenetics

FEBS Open Bio, EarlyView.
Comparative analysis of chloroplast genomes from 14 genera of Thymelaeaceae revealed variation in gene content, ranging from 128 to 142 genes, primarily influenced by IR expansion/contraction events and pseudogenization of ndhF, ndhI, and ndhG. Two large inversions were detected within the large single‐copy region, including a synapomorphic inversion ...
Abdullah, Hui Li, Rushan Yan, Chengyu Chen, Madiha Islam, Abdul Majid, Ibrar Ahmed, Parviz Heidari, Xiaoxuan Tian   +8 more
wiley   +1 more source

The enigmatic monotypic crab plover Dromas ardeola is closely related to pratincoles and coursers (Aves, Charadriiformes, Glareolidae)

Genetics and Molecular Biology, 2010
The phylogenetic placement of the monotypic crab plover Dromas ardeola (Aves, Charadriiformes) remains controversial. Phylogenetic analysis of anatomical and behavioral traits using phenetic and cladistic methods of tree inference have resulted in ...
Sergio L. Pereira, Allan J. Baker
doaj   +1 more source

Using PhyloSuite for molecular phylogeny and tree‐based analyses

iMeta, 2023
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced researchers, conquering the large number of software programs required for a multilocus‐based phylogenetic reconstruction can be somewhat daunting and time‐consuming ...
Chuan-Yu Xiang, Fangluan Gao, Ivan Jakovlić, Hong-Peng Lei, Ye Hu, Hong Zhang, H. Zou, Gui‐tang Wang, Dong Zhang   +8 more
semanticscholar   +1 more source

Relapsing–Remitting Multiple Sclerosis Is Associated With a Dysbiotic Oral Microbiome

Annals of Clinical and Translational Neurology, EarlyView.
ABSTRACT Objective Multiple sclerosis (MS) is a chronic autoimmune disorder characterized by inflammation, demyelination, and neurological impairment. While the gut microbiota's role in MS is extensively studied, the association between the oral microbiota and MS remains underexplored, particularly in North American cohorts.
Sukirth M. Ganesan, Meeta Yadav, Sudeep Ghimire, Peter C. Lehman, Apurva J. Patel, Sydney Woods, Heena Olalde, Jemmie Hoang, Mishelle Paullus, Catherine Cherwin, Christine Gill, Tracey Cho, Ashutosh K. Mangalam   +12 more
wiley   +1 more source

Phylophenetic properties of metabolic pathway topologies as revealed by global analysis

BMC Bioinformatics, 2006
Background As phenotypic features derived from heritable characters, the topologies of metabolic pathways contain both phylogenetic and phenetic components.
Sun Shiwei, Zhang Zefeng, Zhu Xiaopeng, Zhang Zhihua, Skogerbø Geir, Li Shaojuan, Zhang Yong, Lu Hongchao, Shi Baochen, Chen Runsheng   +9 more
doaj   +1 more source

Micro and Nanostructural Diversity of Lizard Osteoderm Capping Tissue in Relation to Mechanical Performance

Advanced Functional Materials, EarlyView.
This study shows that lizard osteoderm capping tissue is a hyper‐mineralized hydroxyapatite layer consistently covering the superficial osteoderm surface in those species studied here, yet it varies greatly in morphology, nanostructure, and mechanical performance across species.
Adrian Rodriguez‐Palomo, Marius Didziokas, Malene Siri Berg Jacobsen, Thorbjørn Erik Køppen Christensen, Innokenty Kantor, Mads Ry Vogel Jørgensen, Klaus Pagh Almtoft, Jesper Skovhus Thomsen, Anthony Herrel, Catherine J.A. Williams, Henrik Birkedal   +10 more
wiley   +1 more source

Unveiling Global Diversity of Patescibacteriota and Functional Interactions with Host Microbes

Advanced Science, EarlyView.
Patescibacteriota represents a diverse group of ultra‐small epibiotic bacteria, which is largely overlooked. By integrating ribosomal protein S3‐based community profiling with MAG‐based metabolic potential analyses, this study provides new insights into their distribution, diversity, and potential interactions with other bacteria across diverse ...
Yanhan Ji, Xu Liu, Shuai Zhao, Sihan Zhou, Yufan Yang, Ping Zhang, Yu Shi, Wei Qin, Guibing Zhu, Yongguan Zhu, Yanzheng Gao, Jiandong Jiang, Baozhan Wang   +12 more
wiley   +1 more source