Results 71 to 80 of about 2,043,696 (204)
PTree: pattern-based, stochastic search for maximum parsimony phylogenies [PDF]
PeerJ, 2013 Phylogenetic reconstruction is vital to analyzing the evolutionary relationship of genes within and across populations of different species. Nowadays, with next generation sequencing technologies producing sets comprising thousands of sequences, robust ...
Ivan Gregor +2 more
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Phylogenetic inference's algorithms [PDF]
, 2016 Phylogenetic inference consist in the search of an evolutionary tree to explain the best way possible genealogical relationships of a set of species.
Fernández Rovira, Alicia +1 more
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Plant DNA barcodes and assessment of phylogenetic community structure of a tropical mixed dipterocarp forest in Brunei Darussalam (Borneo). [PDF]
PLoS ONE, 2017 DNA barcoding is a fast and reliable tool to assess and monitor biodiversity and, via community phylogenetics, to investigate ecological and evolutionary processes that may be responsible for the community structure of forests.
Jacqueline Heckenhauer +7 more
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A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity.
New Phytologist, 2015 The establishment of modern terrestrial life is indissociable from angiosperm evolution. While available molecular clock estimates of angiosperm age range from the Paleozoic to the Late Cretaceous, the fossil record is consistent with angiosperm ...
S. Magallón +3 more
semanticscholar +1 more source
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Molecular biology and evolution, 1987 A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of this method is to find pairs of operational taxonomic units (OTUs [= neighbors]) that minimize the total ...
N. Saitou, M. Nei
semanticscholar +1 more source
Visualising very large phylogenetic trees in three dimensional hyperbolic space
BMC Bioinformatics, 2004 Background Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.
Liberles David A +2 more
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Frontiers in Genetics, 2020 A phylogenetic tree can be used to illustrate the evolutionary relationship between a group of genes, especially duplicated genes, which are sources of genetic innovation and are often a hotspot of research.
Fanbo Meng +9 more
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STRING v10: protein–protein interaction networks, integrated over the tree of life
Nucleic Acids Res., 2014 The many functional partnerships and interactions that occur between proteins are at the core of cellular processing and their systematic characterization helps to provide context in molecular systems biology.
Damian Szklarczyk +13 more
semanticscholar +1 more source
Ecology and EvolutionPhylogenetic trees represent the evolutionary relationships and ancestry of various species or groups of organisms. Comparing these trees by measuring the distance between them is essential for applications such as tree clustering and the Tree of Life ...
Wanlin Li +2 more
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Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree
Genetics, 2016 The distribution of a phenotype on a phylogenetic tree is often a quantity of interest. Many phenotypes have imperfect heritability, so that a measurement of the phenotype for an individual can be thought of as a single realization from the phenotype ...
M. Azim Ansari, X. Didelot
semanticscholar +1 more source