Results 11 to 20 of about 512,344 (329)
APE: Analyses of Phylogenetics and Evolution in R language
Bioinformatics, 2004 UNLABELLED Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as ...
Emmanuel Paradis +2 more
exaly +2 more sources
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Systematic Biology, 2018 Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data.
Andrew Rambaut +2 more
exaly +2 more sources
Relaxed Phylogenetics and Dating with Confidence
PLoS Biology, 2006 In phylogenetics, the unrooted model of phylogeny and the strict molecular clock model are two extremes of a continuum. Despite their dominance in phylogenetic inference, it is evident that both are biologically unrealistic and that the real evolutionary
Alexei J Drummond +2 more
exaly +2 more sources
Polyploid phylogenetics. [PDF]
New Phytologist, 2021 Polyploidy is a dominant feature of extant plant diversity. However, major research questions, including whether polyploidy is important to long-term evolution or is just 'evolutionary noise', remain unresolved due to difficulties associated with the ...
C. Rothfels
semanticscholar +3 more sources
Systematic Biology, 2004 Model selection is a topic of special relevance in molecular phylogenetics that affects many, if not all, stages of phylogenetic inference. Here we discuss some fundamental concepts and techniques of model selection in the context of phylogenetics.
David Posada, Thomas R Buckley
exaly +2 more sources
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Molecular Biology and Evolution, 2012 Computational evolutionary biology, statistical phylogenetics and coalescent-based population genetics are becoming increasingly central to the analysis and understanding of molecular sequence data.
Alexei J Drummond +2 more
exaly +2 more sources
Frontiers in Psychology, 2021 In this article we propose a novel method to estimate the frequency distribution of linguistic variables while controlling for statistical non-independence due to shared ancestry. Unlike previous approaches, our technique uses all available data, from language families large and small as well as from isolates, while controlling for different degrees of
Jäger, Gerhard, Wahle, Johannes
openaire +4 more sources
Taxonomic review of the genus Nycteola Hübner (Lepidoptera, Nolidae) from Korea including potential invasive pests [PDF]
Biodiversity Data Journal, 2023 The genus Nycteola Hübner has been mainly distributed in the Old World and usually feeds on Fagaceae and Salicaceae, but Myrtaceae and Juglandaceae have also been reported. In Korea, the number of this genus has been changed from four to three after 2007,
Yeong-Bin Cha +4 more
doaj +3 more sources
Journal of Software for Algebra and Geometry, 2021 We introduce the package PhylogeneticTrees for Macaulay2 which allows users to compute phylogenetic invariants for group-based tree models. We provide some background information on phylogenetic algebraic geometry and show how the package PhylogeneticTrees can be used to calculate a generating set for a phylogenetic ideal as well as a lower bound for ...
Elizabeth Gross +8 more
openaire +3 more sources