Results 41 to 50 of about 551,943 (360)

The phylogenetics of Leucocytozoon caulleryi infecting broiler chickens in endemic areas in Indonesia [PDF]

Veterinary World, 2017
Aim: The objective of this research was to determine the species and strains of Leucocytozoon caulleryi and study the phylogenetics of L. caulleryi of broiler chickens in endemic areas in Indonesia.
Endang Suprihati, Wiwik Misaco Yuniarti
doaj   +1 more source

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment1

Applications in Plant Sciences, 2016
Premise of the study: Using sequence data generated via target enrichment for phylogenetics requires reassembly of high-throughput sequence reads into loci, presenting a number of bioinformatics challenges.
Matthew G. Johnson, E. Gardner, Yang Liu, R. Medina, B. Goffinet, A. J. Shaw, N. Zerega, N. Wickett   +7 more
semanticscholar   +1 more source

Model Selection and Parameter Inference in Phylogenetics Using Nested Sampling [PDF]

Systematic Biology, 2017
&NA; Bayesian inference methods rely on numerical algorithms for both model selection and parameter inference. In general, these algorithms require a high computational effort to yield reliable estimates.
Patricio Maturana Russel, B. Brewer, S. Klaere, R. Bouckaert   +3 more
semanticscholar   +1 more source

Practice-oriented controversies and borrowed epistemic credibility in current evolutionary biology: phylogeography as a case study [PDF]

, 2013
Although there is increasing recognition that theory and practice in science are intimately intertwined, philosophy of science perspectives on scientific controversies have been historically focused on theory rather than practice.
Arroyo-Santos, Alfonso, Olson, Mark E., Vergara-Silva, Francisco   +2 more
core   +3 more sources

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

Bioinform., 2008
UNLABELLED A key element to a successful Markov chain Monte Carlo (MCMC) inference is the programming and run performance of the Markov chain.
J. Nylander, James C. Wilgenbusch, D. Warren, D. Swofford   +3 more
semanticscholar   +1 more source

The Mitochondrial Genome in Nematode Phylogenetics

Frontiers in Ecology and Evolution, 2020
In recent decades, great strides have been made using various kinds of data including molecular sequences to clarify the phylogenetic relationships of nematodes.
E. Kern, Taeho Kim, Joong-Ki Park
semanticscholar   +1 more source

Climate Warming as a Possible Trigger of Keystone Mussel Population Decline in Oligotrophic Rivers at the Continental Scale

Scientific Reports, 2018
The effects of climate change on oligotrophic rivers and their communities are almost unknown, albeit these ecosystems are the primary habitat of the critically endangered freshwater pearl mussel and its host fishes, salmonids.
Ivan N. Bolotov, Alexander A. Makhrov, Mikhail Yu. Gofarov, Olga V. Aksenova, Paul E. Aspholm, Yulia V. Bespalaya, Mikhail B. Kabakov, Yulia S. Kolosova, Alexander V. Kondakov, Thomas Ofenböck, Andrew N. Ostrovsky, Igor Yu. Popov, Ted von Proschwitz, Mudīte Rudzīte, Māris Rudzītis, Svetlana E. Sokolova, Ilmari Valovirta, Ilya V. Vikhrev, Maxim V. Vinarski, Alexey A. Zotin   +19 more
doaj   +1 more source

Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex

Frontiers in Zoology, 2019
Background Pallenopsis patagonica (Hoek, 1881) is a morphologically and genetically variable sea spider species whose taxonomic classification is challenging.
Jana S. Dömel, Till-Hendrik Macher, Lars Dietz, Sabrina Duncan, Christoph Mayer, Andrey Rozenberg, Katherine Wolcott, Florian Leese, Roland R. Melzer   +8 more
doaj   +1 more source

Annotated check-list of Pteromalidae (Hymenoptera: Chalcidoidea) of Morocco. Part II.

Graellsia, 2021
En esta segunda parte, presentamos la subfamilia Pteromalinae en Marruecos, que incluye 86 especies pertenecientes a 50 géneros. Quince géneros y 37 especies se enumeran por primera vez en la fauna marroquí, de las cuales 9 han sido recientemente ...
Khadija Kissayi, Mircea-Dan Mitroiu, Latifa Rohi   +2 more
doaj   +1 more source

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Systematic Biology, 2019
BEAGLE is a high-performance likelihood-calculation library for phylogenetic inference. The BEAGLE library defines a simple, but flexible, application programming interface (API), and includes a collection of efficient implementations for calculation ...
Daniel L. Ayres, Michael P Cummings, G. Baele, Aaron E Darling, Paul O Lewis, D. Swofford, J. Huelsenbeck, P. Lemey, A. Rambaut, M. Suchard   +9 more
semanticscholar   +1 more source