Results 101 to 110 of about 15,172 (305)
Overview of the First Phylogenomics Conference [PDF]
, 2007 Affiliation: H. Philippe: Département de Biochimie, Université de MontréalThe First Phylogenomics Conference was held in Ste-Adèle (Québec, Canada) in March 2006. Selected papers appear in this special issue of BMC Evolutionary Biology.
Blanchette, Mathieu +3 more
core +1 more source
Refining the Vertebrate Mitochondrial 12S rRNA Secondary Structure by Comparative Analysis
Integrative Zoology, EarlyView.This flowchart outlines the comprehensive workflow of the study, integrating diverse bioinformatics tools (e.g., NCBI2GO, SSU‐align, bpRNA) and their sequential interactions. Key steps, such as data preprocessing, structural prediction, and evolutionary analysis, are depicted with their respective outputs (e.g., standardized records, consensus ...
Fengxia Li +6 more
wiley +1 more source
, 2023 Data and code for manuscript "Synteny identifies reliable orthologs for phylogenomics and comparative genomics of the Brassicaceae". Preprint available at bioRxiv: https://doi.org/10.1101/2022.09.07.506897.This work was supported by the German Research ...
Walden, Nora, Schranz, M. Eric
core +1 more source
Poplar: a phylogenomics pipeline
Bioinformatics AdvancesAbstract Motivation Generating phylogenomic trees from the genomic data is essential in understanding biological systems. Each step of this complex process has received extensive attention and has been significantly streamlined over the years.
Elizabeth Koning +2 more
openaire +2 more sources
Integrative Zoology, EarlyView.This review synthesizes gibbon genomic research to propose a framework from evolutionary reconstruction and multidimensional vulnerability assessment to conservation intervention and long‐term dynamic monitoring. We clarify the supporting role of genomic evidence in conservation decision‐making and delineate a practicable pathway for integrating ...
Hangyu Tian, Pengfei Fan, Dongdong Wu
wiley +1 more source
Mitochondrial DNA. Part B. Resources, 2020 Plumarella spinosa (Anthozoa: Octocorallia: Primnoidae) is an endangered marine soft coral species discovered on a 50–100 m deep reefs in South Korea. We analyzed the mitochondrial genome sequence of this species.
Eun Hwa Choi +7 more
doaj +1 more source
Phylogenomics in algal research: current trends and future perspectives
, 2015 Phylogenomics is the study of evolutionary histories among organismal lineages based on comparative analysis of genome-scale data. Until recent years, the application of phylogenomics in algal research had been limited by data availability.
Cheong Xin Chan, Chan, Cheong Xin
core +1 more source
phylter: Detect and Remove Outliers in Phylogenomics Datasets
, 2023 Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are ...
Dray, Stéphane +3 more
core +1 more source
Integrative Zoology, EarlyView.ABSTRACT Understanding how amphibians adapt to terrestrial and arid environments is important for elucidating vertebrate terrestrialization. In this study, we present the first chromosome‐level, high‐quality genome assembly of Strauchbufo raddei, constructed using PacBio HiFi long‐read sequencing and Hi‐C scaffolding. The assembled genome is 4.47 Gb in
Fanrui Chen +7 more
wiley +1 more source
Mitochondrial DNA. Part B. ResourcesThe worm snail Thylacodes adamsii (Mörch, 1859) (Littorinimorpha: Vermetidae) is a sessile gastropod that mainly inhabits rocky shores along the warm temperate to tropical ocean. Herein, the complete mitochondrial genome (mitogenome) of T.
Yumin Lee +3 more
doaj +1 more source