Results 61 to 70 of about 45,343 (323)
Mitochondrial DNA. Part B. Resources, 2021 The complete mitochondrial genome of an endangered triton snail Charonia lampas (Littorinimorpha: Charoniidae) from South Korea was determined with the size of 15,330 bp, which contained 13 protein-coding genes, 22 tRNAs, and two rRNAs.
Eun Hwa Choi, Ui Wook Hwang
doaj +1 more source
SIFTER search: a web server for accurate phylogeny-based protein function prediction. [PDF]
, 2015 We are awash in proteins discovered through high-throughput sequencing projects. As only a minuscule fraction of these have been experimentally characterized, computational methods are widely used for automated annotation.
Brenner, Steven E +2 more
core +5 more sources
Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity [PDF]
, 2020 The red-crowned crane (Grus japonensis) is an endangered, large-bodied crane native to East Asia. It is a traditional symbol of longevity and its long lifespan has been confirmed both in captivity and in the wild.
Bhak, Jong +14 more
core +1 more source
FUNYBASE: a FUNgal phYlogenomic dataBASE [PDF]
BMC Bioinformatics, 2008 Abstract Background The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data, including the quality of genome annotation and the difficulty of retrieving true orthologs, makes such investigations challenging.
Marthey, Sylvain +9 more
openaire +5 more sources
Identification and characterization of archaeal pseudomurein biosynthesis genes through pangenomics
mSystemsThe peptidoglycan (PG, or murein) is a mesh-like structure, which is made of glycan polymers connected by short peptides and surrounds the cell membrane of nearly all bacterial species.
Valérian Lupo +7 more
doaj +1 more source
Scientific Reports, 2022 The long-necked woodwasp superfamily Xiphydrioidea belongs to the suborder Symphyta (Hymenoptera). Here we newly characterize the complete mitochondrial genome of the South Korean Euxiphydria potanini (Xiphydriidae) using next-generation sequencing: 16 ...
Bia Park, Ui Wook Hwang
doaj +1 more source
Gene Function Classification Using Bayesian Models with Hierarchy-Based Priors [PDF]
, 2006 We investigate the application of hierarchical classification schemes to the annotation of gene function based on several characteristics of protein sequences including phylogenic descriptors, sequence based attributes, and predicted secondary structure.
A Clare +47 more
core +4 more sources
, 2018 Phylogenomics aims to infer the evolutionary relationships of organisms, and their genomes, genes, and proteins, from genomic data. Understanding the evolution of these components can provide clues about their biological functions. Here we describe minimal protocols for inferring families of genes (and the proteins they encode), and using them in ...
Riley, Robert, Nagy, Laszlo
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Annual Review of Ecology, Evolution, and Systematics, 2005 ▪ Abstract The continuous flow of genomic data is creating unprecedented opportunities for the reconstruction of molecular phylogenies. Access to whole-genome data means that phylogenetic analysis can now be performed at different genomic levels, such as primary sequences and gene order, allowing for reciprocal corroboration of the results.
Philippe, Hervé +3 more
openaire +2 more sources
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis [PDF]
Nucleic Acids Research, 2007 Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein molecular function. The Berkeley Phylogenomics Group provides a series of web servers for phylogenomic analysis: classification of sequences to pre-computed families and ...
Glanville, Jake Gunn +3 more
openaire +2 more sources