Results 61 to 70 of about 15,172 (305)

Sequence‐identical microbial genomes with disparate taxonomy: A large‐scale redundancy analysis in NCBI genome database

iMetaOmics, EarlyView.
Public microbial genome repositories (such as NCBI) contain thousands of sequence‐identical genome assemblies assigned to different taxonomic lineages, potentially inflating microbial diversity and introducing bias into comparative genomics, metagenomics, and pathogen surveillance.
Niharika Saraf, Gaurav Sharma
wiley   +1 more source

Drought-Induced Responses of Nitrogen Metabolism in Ipomoea batatas

Plants, 2020
This study investigated the effect of water stress, simulated by the polyethylene glycol (PEG-6000) method, on nitrogen (N) metabolism in leaves and roots of hydroponically grown sweet potato seedlings, Xushu 32 (X32) and Ningzishu 1 (N1).
Houqiang Xia, Tao Xu, Jing Zhang, Ke Shen, Zongyun Li, Jingran Liu   +5 more
doaj   +1 more source

Complete mitochondrial genome of a golden orb-web spider Trichonephila clavata (Chelicerata, Arachnida) from South Korea

Mitochondrial DNA. Part B. Resources, 2023
The mitochondrial genome of a golden orb-web spider Trichonephila clavata (L. Koch, 1878) from South Korea is determined and characterized in detail, which is the second mitochondrial genome reported from this species: the first was published from the ...
Eun Hwa Choi, Ui Wook Hwang
doaj   +1 more source

FUNYBASE: a FUNgal phYlogenomic dataBASE [PDF]

BMC Bioinformatics, 2008
Abstract Background The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data, including the quality of genome annotation and the difficulty of retrieving true orthologs, makes such investigations challenging.
Marthey, Sylvain, Aguileta, Gabriela, Rodolphe, Francois, Gendrault, Annie, Giraud, Tatiana, Fournier, Elisabeth, Lopez-Villavicencio, Manuela, Gautier, Angelique, Lebrun, Marc-Henri, Chiapello, Helene   +9 more
openaire   +5 more sources

Metagenomic and culture‐based insights into host and plasmid contexts of high‐risk ARGs in poultry farm environments

iMetaOmics, EarlyView.
Shotgun metagenomics and culture‐based isolate genomics revealed position‐associated high‐risk antibiotic resistance genes (ARGs) signals across poultry manure piles and surrounding soils. Culture‐confirmed Enterobacteriaceae and IncHI2A‐related blaNDM‐5 plasmid backgrounds further highlight priority host‐ARG‐plasmid contexts for farm antimicrobial ...
Yaling Wang, Lianwei Ye, Linan He, Zhenlong Wu, Yiwen Yang, Sheng Chen   +5 more
wiley   +1 more source

Atypical Varicella‐Like Presentation of an Imported Mpox Case in Austria Confirmed to be Infected With Clade Ib

JEADV Clinical Practice, EarlyView.
ABSTRACT The recent upsurge of cases caused by the newly identified Clade Ib monkeypox virus (MPXV) in the Democratic Republic of the Congo and other countries has emerged as a significant public health concern. A 34‐year‐old male tourist from Venezuela presented in Vienna, Austria, during his travels through Europe with fever, pharyngitis and an ...
Amélie Hampel, David N. Springer, Jeremy V. Camp, Stephan W. Aberle, Maximilian Egg, Luigi Segagni Lusignani, Katharina Grabmeier‐Pfistershammer, Robert Strassl, Judith Wendt, Tamar Kinaciyan, Alessandra Handisurya   +10 more
wiley   +1 more source

Comparative Analysis of Salt Responsive MicroRNAs in Two Sweetpotato [Ipomoea batatas (L.) Lam.] Cultivars With Different Salt Stress Resistance

Frontiers in Plant Science, 2022
Sweetpotato [Ipomoea batatas (L.) Lam.] is an important food, vegetable and economic crop, but its productivity is remarkably affected by soil salinity.
Zhengmei Yang, Zhengmei Yang, Tingting Dong, Xibin Dai, Yiliang Wei, Yujie Fang, Lei Zhang, Mingku Zhu, Ghazala Nawaz, Qinghe Cao, Tao Xu   +10 more
doaj   +1 more source

Supplemental data for "Benefits of manual-sequence-processing steps and an Angiosperms353 phylogenomics pipeline applied to the Celastrales"

, 2022
Supplemental data for "Benefits of manual-sequence-processing steps and an Angiosperms353 phylogenomics pipeline applied to the ...
Ben Stöver (8588159), Mark Simmons (832394), Julio A. Lombardi (7063208), Félix Forest (11097695), Grace E. Brewer (7397678), Shyamali Roy (8378019), Olivier Maurin (3316908), William J. Baker (606357)   +7 more
core   +1 more source

Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics

Frontiers in Microbiology, 2021
Contaminating sequences in public genome databases is a pervasive issue with potentially far-reaching consequences. This problem has attracted much attention in the recent literature and many different tools are now available to detect contaminants ...
Valérian Lupo, Valérian Lupo, Mick Van Vlierberghe, Hervé Vanderschuren, Frédéric Kerff, Denis Baurain, Luc Cornet, Luc Cornet   +7 more
doaj   +1 more source

Reconstructing evolutionary timescales using phylogenomics

, 2016
Tong, K. Jun, Lo, Nathan, Ho, Simon Y. W. (2016): Reconstructing evolutionary timescales using phylogenomics.
Ho, Simon Y. W., Tong, K. Jun, Lo, Nathan   +2 more
core   +1 more source