Novel single nucleotide polymorphism-based assay for genotyping Mycobacterium avium subsp. paratuberculosis [PDF]
, 2016 Typing of Mycobacterium avium subspecies paratuberculosis strains presents a challenge, since they are genetically monomorphic and traditional molecular techniques have limited discriminatory power.
Bryant, Josephine +6 more
core +2 more sources
Aggregation of Single Nucleotide Polymorphisms in a Human H5N1 Clade 2.2 Hemagglutinin [PDF]
, 2007 The evolution of H5N1 has attracted significant interest 1-4 due to linkages with avian 5,6 and human infections 7,8. The basic tenets of influenza genetics 9 attribute genetic drift to replication errors caused by a polymerase complex that lacks a ...
Abdelattar Arafa +17 more
core +2 more sources
Single Feature Polymorphism Discovery in Rice [PDF]
, 2007 The discovery of nucleotide diversity captured as single feature polymorphism (SFP) by using the expression array is a high-throughput and effective method in detecting genome-wide polymorphism.
AJ Garris +27 more
core +3 more sources
Automation in genotyping of single nucleotide polymorphisms [PDF]
Human Mutation, 2001 Automation for genotyping of single nucleotide polymorphisms (SNPs) can be split into the automation of the sample preparation and the automation of the analysis technology. SNP genotyping methods are reviewed and solutions for their automation discussed. A panacea for SNP genotyping does not exist.
openaire +3 more sources
Bayesian variable selection using an informed reversible jump in imaging genetics: an application to schizophrenia [PDF]
arXiv, 2023 From a practical perspective, proposals are one of the main bottleneck for any Markov Chain Monte Carlo (MCMC) algorithm. This paper suggests a novel data driven or informed proposal for reversible jump MCMC for Bayesian variable selection in the context of predictive risk assessment for schizophrenia based on imaging genetic data.
arxiv
Allele mining in β-lactoglobulin gene of Capra hircus [PDF]
, 2015 β-Lactoglobulin (β-LG) genetic polymorphisms are important and well known due to their effects on quantitative traits and technological properties of milk.
Bisen, PS +7 more
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Single-Nucleotide Polymorphisms in the p53 Pathway [PDF]
Cold Spring Harbor Symposia on Quantitative Biology, 2005 A cell culture assay has been developed that detects and validates single-nucleotide polymorphisms (SNPs) in genes that populate the p53 pathway. One hundred thirteen EBV-transformed human B-lymphocyte cell lines obtained from a diverse population were employed to measure the apoptotic response to gamma radiation.
Z. Feng +10 more
openaire +3 more sources
Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa [PDF]
, 2017 Rapid progress in next generation sequencing and allied computational tools have aided in identification of single nucleotide variants in genomes of several organisms. In the present study, we have investigated single nucleotide polymorphism (SNP) in ten
Ramanathan, Babu *
core +1 more source
Pharmacogenomics and Personalized Medicine, 2014 Rosalind B Penney,1 Abbie Lundgreen,2 Aiwei Yao-Borengasser,3 Vineetha K Edavana,3 Suzanne Williams,3 Ishwori Dhakal,4 Roger K Wolff,2 Susan Kadlubar,3 Martha L Slattery2 1Department of Environmental and Occupational Health, University of Arkansas for ...
Penney RB +8 more
doaj
Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply [PDF]
, 2017 Breeding crops with ideal root system architecture for efficient absorption of phosphorus is an important strategy to reduce the use of phosphate fertilizers.
Broadley, Martin R. +12 more
core +1 more source