Results 21 to 30 of about 2,621,675 (239)

Top-ranked expressed gene transcripts of human protein-coding genes investigated with GTEx dataset

Scientific Reports, 2020
With considerable accumulation of RNA-Seq transcriptome data, we have extended our understanding about protein-coding gene transcript compositions. However, alternatively compounded patterns of human protein-coding gene transcripts would complicate gene ...
Kuo-Feng Tung, Chao-Yu Pan, Chao-Hsin Chen, Wen-chang Lin   +3 more
semanticscholar   +1 more source

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

Nucleic Acids Research, 2019
With the rapid increase of sequenced metazoan mitochondrial genomes, a detailed manual annotation is becoming more and more infeasible. While it is easy to identify the approximate location of protein-coding genes within mitogenomes, the peculiar ...
A. Donath, Frank Jühling, Marwa Al-Arab, S. Bernhart, Franziska Reinhardt, P. Stadler, M. Middendorf, Matthias Bernt   +7 more
semanticscholar   +1 more source

Finding protein-coding genes through human polymorphisms.

PLoS ONE, 2013
Human gene catalogs are fundamental to the study of human biology and medicine. But they are all based on open reading frames (ORFs) in a reference genome sequence (with allowance for introns).
Edward Wijaya, Martin C Frith, Paul Horton, Kiyoshi Asai   +3 more
doaj   +1 more source

The complete mitochondrial DNA sequence of Putian Loquat longicorn (Anoplophora chinensis)

Mitochondrial DNA. Part B. Resources, 2020
The complete mitochondrial genome of Putian Loquat longicorn (Anoplophora chinensis) was determined in this study. Its mitochondrial genome (15,871 bp) contains 13 protein-coding genes, 22 tRNA genes, two ribosomal RNA genes (12S rRNA and 16S rRNA), and ...
Long-Wei Fu, Jun Liu, Chun-Hua Wang, Shou-Kai Lin, Ling-Xiao Liu, Yun-Guo Liu, Yan-Qing Ji   +6 more
doaj   +1 more source

Integrative analyses of transcriptome sequencing identify novel functional lncRNAs in esophageal squamous cell carcinoma. [PDF]

, 2017
Long non-coding RNAs (lncRNAs) have a critical role in cancer initiation and progression, and thus may mediate oncogenic or tumor suppressing effects, as well as be a new class of cancer therapeutic targets. We performed high-throughput sequencing of RNA
Ai, B, Bai, X-F, Cao, H-H, Feng, C-C, He, J-Z, Huang, G-W, Koeffler, HP, Lei, F, Li, C-Q, Li, E-M, Li, M, Li, S, Li, X, Li, X-C, Liao, L-D, Lin, D-C, Liu, Y-J, Shen, J-H, Tang, Z-D, Wang, L-D, Wang, M-R, Wang, Q-Y, Wang, S-H, Wu, B-L, Wu, J-Y, Wu, Z-Y, Xu, L-Y, Xu, Y-J, Xue, Y-J, Zhang, J, Zhao, J-M, Zheng, C-P, Zhu, Y   +32 more
core   +1 more source

Transduplication resulted in the incorporation of two protein-coding sequences into the Turmoil-1 transposable element of C. elegans [PDF]

, 2008
Transposable elements may acquire unrelated gene fragments into their sequences in a process called transduplication. Transduplication of protein-coding genes is common in plants, but is unknown of in animals.
Ast, Gil, Makalowski, Wojciech, Pupko, Tal, Sela, Noa, Stern, Adi   +4 more
core   +4 more sources

Data for praying mantis mitochondrial genomes and phylogenetic constructions within Mantodea

Data in Brief, 2018
In this data article, we provide five datasets of mantis mitochondrial genomes: (1) PCG123: nucleotide sequences of 13 protein-coding genes including all codon positions; (2) PCG123R: nucleotide sequences of two rRNAs and 13 protein-coding genes ...
Le-Ping Zhang, Dan-Na Yu, Kenneth B. Storey, Hong-Yi Cheng, Jia-Yong Zhang   +4 more
doaj   +1 more source

The complete mitochondrial genome and phylogenetic analysis of Apogonichthys lineatus（Osteichthyes: Apogonidae）

Mitochondrial DNA. Part B. Resources, 2019
The complete mitochondrial genome of the Apogonichthys lineatus has been determined in this study. The complete genome (mtDNA) is 16,510 base pairs in length and contains 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes.
Jiayan Xie, Yahong Guo, Jiantong Feng, Yingying Ye, Jiji Li, Baoying Guo, Aiyi Zhu   +6 more
doaj   +1 more source

Massive gene amplification on a recently formed Drosophila Y chromosome. [PDF]

, 2019
Widespread loss of genes on the Y is considered a hallmark of sex chromosome differentiation. Here we show that the initial stages of Y evolution are driven by massive amplification of distinct classes of genes. The neo-Y chromosome of Drosophila miranda
Bachtrog, Doris, Bracewell, Ryan, Mahajan, Shivani   +2 more
core   +1 more source

De novo origin of human protein-coding genes. [PDF]

PLoS Genetics, 2011
The de novo origin of a new protein-coding gene from non-coding DNA is considered to be a very rare occurrence in genomes. Here we identify 60 new protein-coding genes that originated de novo on the human lineage since divergence from the chimpanzee. The
Dong-Dong Wu, David M Irwin, Ya-Ping Zhang   +2 more
doaj   +1 more source