Results 21 to 30 of about 2,538,848 (322)

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana [PDF]

, 2007
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated.
Antonio, Baltazar A., Aono, Hideo, Apweiler, Rolf, Barrero, Roberto A., Bruskiewich, Richard, Bureau, Thomas, Burr, Benjamin, Burr, Frances, Costa de Oliveira, Antonio, Fujii, Yasuyuki, Fuks, Galina, Gojobori, Takashi, Habara, Takuya, Haberer, Georg, Han, Bin, Harada, Erimi, Higo, Kenichi, Hilton, Phillip B., Hiraki, Aiko T., Hirochika, Hirohiko, Hoen, Douglas, Hokari, Hiroki, Hosokawa, Satomi, Hsing, Yue, Ikawa, Hiroshi, Ikeo, Kazuho, Imanishi, Tadashi, Ito, Yukiyo, Itoh, Takeshi, Jaiswal, Pankaj, Kanno, Masako, Kawahara, Yosihiro, Kawamura, Toshiyuki, Kawashima, Hiroaki, Khurana, Jitendra P., Kikuchi, Shoshi, Komatsu, Setsuko, Koyanagi, Kanako O., Kubooka, Hiromi, Liberherr, Damien, Lin, Yao-Cheng, Lonsdale, David, Matsumoto, Takashi, Matsuya, Akihiro, McCombie, W. Richard, Messing, Joachim, Miyao, Akio, Mulder, Nicola, Nagamura, Yoshiaki, Nam, Jongmin, Namiki, Nobukazu, Numa, Hisataka, Nurimoto, Shin, O'Donovan, Claire, Ohyanagi, Hajimi, Okido, Toshihisa, OOta, Satoshi, Osato, Naoki, Palmer, Lance E., Quetier, Francis, Raghuvanshi, Surabh, Saichi, Naomi, Sakai, Hiroaki, Sakai, Yasumichi, Sakata, Katsumi, Sakurai, Tetsuya, Saski, Takuji, Sato, Fumihiko, Sato, Yoshiharu, Schoof, Heiko, Seki, Motoaki, Shibata, Katsumi, Shibata, Michie, Shimizu, Yuji, Shinozaki, Kazuo, Shinso, Yuji, Singh, Nagendra K., Smith-White, Brian, Takeda, Jun-ichi, Tanaka, Tsuyoshi, Tanino, Motohiko, Tatusova, Tatiana, Thongjuea, Supat, Todokoro, Fusano, Tsugane, Mika, Tyagi, Akhilesh K., Vanavichit, Apichart, Wang, Aihui, Wing, Rod A., Yamaguchi, Kaori, Yamamoto, Mayu, Yamamoto, Naoyuki, Yamasaki, Chisato, Yu, Yeisoo, Zhang, Hao, Zhao, Qiang   +95 more
core   +3 more sources

Finding protein-coding genes through human polymorphisms.

PLoS ONE, 2013
Human gene catalogs are fundamental to the study of human biology and medicine. But they are all based on open reading frames (ORFs) in a reference genome sequence (with allowance for introns).
Edward Wijaya, Martin C Frith, Paul Horton, Kiyoshi Asai   +3 more
doaj   +1 more source

The complete mitochondrial genome and phylogenetic analysis of Apogonichthys lineatus（Osteichthyes: Apogonidae）

Mitochondrial DNA. Part B. Resources, 2019
The complete mitochondrial genome of the Apogonichthys lineatus has been determined in this study. The complete genome (mtDNA) is 16,510 base pairs in length and contains 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes.
Jiayan Xie, Yahong Guo, Jiantong Feng, Yingying Ye, Jiji Li, Baoying Guo, Aiyi Zhu   +6 more
doaj   +1 more source

Integrative analyses of transcriptome sequencing identify novel functional lncRNAs in esophageal squamous cell carcinoma. [PDF]

, 2017
Long non-coding RNAs (lncRNAs) have a critical role in cancer initiation and progression, and thus may mediate oncogenic or tumor suppressing effects, as well as be a new class of cancer therapeutic targets. We performed high-throughput sequencing of RNA
Ai, B, Bai, X-F, Cao, H-H, Feng, C-C, He, J-Z, Huang, G-W, Koeffler, HP, Lei, F, Li, C-Q, Li, E-M, Li, M, Li, S, Li, X, Li, X-C, Liao, L-D, Lin, D-C, Liu, Y-J, Shen, J-H, Tang, Z-D, Wang, L-D, Wang, M-R, Wang, Q-Y, Wang, S-H, Wu, B-L, Wu, J-Y, Wu, Z-Y, Xu, L-Y, Xu, Y-J, Xue, Y-J, Zhang, J, Zhao, J-M, Zheng, C-P, Zhu, Y   +32 more
core   +1 more source

H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification

Science, 2019
Reversing chromatin dynamics for development Compacted chromatin regions, marked by trimethylation of histone H3 at position lysine 9 (H3K9me3), occur at highly repeated DNA sequences, helping to suppress recombination and gene expression.
Dario Nicetto, G. Donahue, Tanya Jain, Tao Peng, Simone Sidoli, Lihong Sheng, Thomas Montavon, Justin S. Becker, Jessica Grindheim, Kimberly R. Blahnik, B. Garcia, Kai Tan, R. Bonasio, T. Jenuwein, K. Zaret   +14 more
semanticscholar   +1 more source

Transduplication resulted in the incorporation of two protein-coding sequences into the Turmoil-1 transposable element of C. elegans [PDF]

, 2008
Transposable elements may acquire unrelated gene fragments into their sequences in a process called transduplication. Transduplication of protein-coding genes is common in plants, but is unknown of in animals.
Ast, Gil, Makalowski, Wojciech, Pupko, Tal, Sela, Noa, Stern, Adi   +4 more
core   +4 more sources

A unified allosteric/torpedo mechanism for transcriptional termination on human protein-coding genes

Genes & Development, 2019
In this study, Eaton et al. examine the validity of the allosteric and torpedo models of transcription termination on protein-coding genes. Using several genomic and molecular assays, the authors propose a model that combines both allosteric/torpedo ...
Joshua D. Eaton, L. Francis, Lee Davidson, Steven West   +3 more
semanticscholar   +1 more source

Permanent improved high-quality draft genome sequence of Nocardia casuarinae strain BMG51109, an endophyte ofactinorhizal root nodules of Casuarina glauca [PDF]

, 2016
Here, we report the first genome sequence of aNocardiaplant endophyte, N. casuarinaestrain BMG51109, isolated fromCasu-arina glaucaroot nodules. The improved high-quality draft genome sequence contains 8,787,999 bp with a 68.90% GC contentand 7,307 ...
Beauchemin, Nicholas, Chen, Amy, Ghodhbane-Gtari, Faten, Gtari, Maher, Gueddou, Abdellatif, Hezbri, Karima, Huntemann, Marcel, Ivanova, Natalia, Ktari, Amir, Kyrpides, Nikos, Louati, Moussa, Markowitz, Victor, Mavrommatis, Kostas, Nouioui, Imen, Pagani, Ioanna, Sen, Arnab, Tisa, Louis S., Wall, Luis, Woyke, Tanja   +18 more
core   +4 more sources

Evolution of organellar genes of chlorophyte algae: Relevance to phylogenetic inference.

PLoS ONE, 2019
Protein-coding genes in organellar genomes have been widely used to resolve relationships of chlorophyte algae. The mode of evolution of these protein-coding genes affects relationship estimations, yet selection effects on genes commonly used as markers ...
Nuttapong Mekvipad, Anchittha Satjarak
doaj   +1 more source

Network-based approaches to explore complex biological systems towards network medicine [PDF]

, 2018
Network medicine relies on different types of networks: from the molecular level of protein–protein interactions to gene regulatory network and correlation studies of gene expression.
Conte, Federica, Farina, Lorenzo, Fiscon, Giulia, Paci, Paola   +3 more
core   +1 more source