Results 61 to 70 of about 2,621,675 (239)

The Asian Rice Gall Midge (Orseolia oryzae) Mitogenome Has Evolved Novel Gene Boundaries and Tandem Repeats That Distinguish Its Biotypes. [PDF]

PLoS ONE, 2015
The complete mitochondrial genome of the Asian rice gall midge, Orseolia oryzae (Diptera; Cecidomyiidae) was sequenced, annotated and analysed in the present study.
Isha Atray, Jagadish Sanmallappa Bentur, Suresh Nair   +2 more
doaj   +1 more source

Phylogenetic association of Schizothorax esocinus with other Schizothoracinae fishes based on protein coding genes

Mitochondrial DNA. Part B. Resources, 2019
Whole mitochondrial DNA (mtDNA) for Schizothorax esocinus sequence was found to be 16,591 bp with 13 protein-coding genes, 2 rRNAs genes, 22 tRNA genes, and 2 non-coding region.
Saira Bibi, Muhammad Fiaz khan
doaj   +1 more source

Automated DNA Motif Discovery [PDF]

, 2010
Ensembl's human non-coding and protein coding genes are used to automatically find DNA pattern motifs. The Backus-Naur form (BNF) grammar for regular expressions (RE) is used by genetic programming to ensure the generated strings are legal.
Graillet, Olivia Sanchez, Harrison, A. P., Langdon, W. B.   +2 more
core   +2 more sources

Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum. [PDF]

, 2015
BackgroundPlasmodium falciparum, the deadliest malaria-causing parasite, has an extremely AT-rich (80.7 %) genome. Because of high AT-content, sequence-based annotation of genes and functional elements remains challenging.
Bunnik, Evelien M, Le Roch, Karine G, Lonardi, Stefano, Lu, Xueqing Maggie, Nasseri, Sara, Pokhriyal, Neeti   +5 more
core   +2 more sources

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data

Nucleic Acids Res., 2016
The abnormal transcriptional regulation of non-coding RNAs (ncRNAs) and protein-coding genes (PCGs) is contributed to various biological processes and linked with human diseases, but the underlying mechanisms remain elusive.
Ke-ren Zhou, Shun Liu, Wen-Ju Sun, Lingling Zheng, Hui Zhou, Jianhua Yang, L. Qu   +6 more
semanticscholar   +1 more source

Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome. [PDF]

, 2019
Introns are a prevalent feature of eukaryotic genomes, yet their origins and contributions to genome function and evolution remain mysterious. In budding yeast, repression of the highly transcribed intron-containing ribosomal protein genes (RPGs ...
Ares, Manuel, Donohue, John Paul, Igel, Haller, Katzman, Sol, Munding, Elizabeth M, Perriman, Rhonda J, Shelansky, Robert, Shiue, Lily, Talkish, Jason   +8 more
core   +1 more source

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates [PDF]

, 2008
Transposed elements (TEs) are mobile genetic sequences. During the evolution of eukaryotes TEs were inserted into active protein-coding genes, affecting gene structure, expression and splicing patterns, and protein sequences.
Asaf Levy, Biemont, Borchert, Callinan, Clark, Consortium, Dagan, Deininger, Deininger, Gasteiger, Giardine, Gil Ast, Griffiths-Jones, Han, Hedges, Houwing, Johnson, Jordan, Jurka, Karolchik, Kent, Kim, Kim, Kuhn, Lander, Lev-Maor, Lippman, Lorenc, Makalowski, Martignetti, McKusick, Morgan, Noa Sela, Pasyukova, Piriyapongsa, Pruitt, Sayah, Sela, Smalheiser, Smalheiser, Sorek, Sorek, Thornburg, Waterston   +43 more
core   +3 more sources

Complete sequence of mitochondrial DNA of Gracilaria tenuistipitata (Rhodophyta)

Mitochondrial DNA. Part B. Resources, 2018
We sequenced and analysed the complete mitogenome of Gracilaria tenuistipitata. The complete G. tenuistipitata mitogenome is 25,819 bp long, containing 50 genes, including 24 protein-coding genes, one intron, two rRNA genes, 23 tRNA genes, and one ...
Na Liu, Yue Li, Cui Liu, Tao Liu, Weizhou Chen   +4 more
doaj   +1 more source

Protein-Coding Genes’ Retrocopies and Their Functions

Viruses, 2017
Transposable elements, often considered to be not important for survival, significantly contribute to the evolution of transcriptomes, promoters, and proteomes. Reverse transcriptase, encoded by some transposable elements, can be used in trans to produce
M. Kubiak, I. Makałowska
semanticscholar   +1 more source

First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications

European Journal of Entomology, 2017
The mitochondrial genome of Mesomelena mesomelaena (Loew, 1848) is the first to be sequenced in the flesh fly subfamily Miltogramminae (Diptera: Sarcophagidae).
Liping YAN, Ming ZHANG, Yunyun GAO, Thomas PAPE, Dong ZHANG   +4 more
doaj   +1 more source