Results 271 to 280 of about 1,223,016 (311)

Aligning DNA Sequences to Minimize the Change in Protein

Journal of Combinatorial Optimization, 1999
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Yufang Hua, Tao Jiang 0001, Bin Wu
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Fast Comparison of a DNA Sequence with a Protein Sequence Database

Genome Science and Technology, 1996
We describe a computer program, named DNA-Protein Search (DPS), for comparing a megabase DNA sequence with a protein sequence database. The DPS program addresses the problems of frameshifts and introns in the DNA sequence. The DPS program was used to compare each of the following sequences with the Swiss-Prot database: the 1.8 ...
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Computer analysis of DNA and protein sequences

European Journal of Biochemistry, 1991
Some recent trends in the development of theoretical methods for DNA and protein sequence analysis are reviewed, with particular emphasis on the design of new databases, motif searches, sequence alignment algorithms and applications of neural networks.
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Computer Manipulation of DNA and Protein Sequences

Current Protocols in Molecular Biology, 1995
AbstractThis unit outlines a variety of methods by which DNA sequences can be manipulated by computers. Procedures for entering sequence data into the computer and assembling raw sequence data into a contiguous sequence are described first, followed by a description of methods of analyzing and manipulating sequences‐‐e.g., verifying sequences ...
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Protein and DNA Sequence Mining

2013
Sequence similarity searching is a method that can be applied by almost anybody for finding similarities between his/her query sequences of amino acids and DNA and the sequences known to be associated with different clinical effects. The latter have been included in database systems like the Basic Local Alignment Search Tool (BLAST) database system ...
Ton J. Cleophas, Aeilko H. Zwinderman
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Statistical Methods and Insights for Protein and DNA Sequences

Annual Review of Biophysics and Biophysical Chemistry, 1991
Note: Department of Mathematics, Stanford University, California 94305.
S, Karlin, P, Bucher, V, Brendel, S F, Altschul   +3 more
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Entropies of coding and noncoding sequences of DNA and proteins

Biophysical Chemistry, 1992
The entropies of protein coding genes from Escherichia coli were calculated according to Boltzmann's formula. Entropies of the coding regions were compared to the entropies of noncoding or miscoding ones. With nucleotides as code units, the entropies of the coding regions, when compared to the entropies of complete sequences (leader and coding region ...
Ilić, Igor, Lauc, Gordan, Heffer, Marija   +2 more
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Sequence Matters: The Influence of Basepair Sequence on DNA-protein Interactions

2007
The sequencing of the human genome, along with the 200-odd other genomes that have been sequenced, does not represent the solution to a puzzle but rather the necessary introduction to a bigger puzzle. That puzzle is how all the 30,000-odd some genes in the human genome are expressed and controlled in a proper sequence for a cell to function.
Yan Mei Wang, Shirley S. Chan, Robert H. Austin   +2 more
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Sequence-specific interaction of DNA and chromosomal protein

Journal of Molecular Biology, 1969
Abstract The principles which regulate nucleotide sequence-specific binding of chromosomal protein to DNA have been studied with isolated chromatin. The experimental strategy is to dissociate chromosomal proteins from chromatin by 2 m -NaCl and then to determine the conditions under which the chromosomal proteins can be caused to reassociate with ...
I, Bekhor, G M, Kung, J, Bonner
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Indirect Readout of DNA Sequence by Proteins: The Roles of DNA Sequence‐Dependent Intrinsic and Extrinsic Forces

2006
Publisher Summary This chapter discusses the recent insights into how DNA sequence affects DNA structure and how solvent-mediated alterations in DNA structure may play a role in gene regulation. The stability and sequence specificity of many protein–DNA complexes is remarkably dependent on the sequences of bases that are not in contact with protein ...
Gerald B, Koudelka, Steven A, Mauro, Mihai, Ciubotaru   +2 more
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