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Readout of intrinsic and induced DNA shape by homeodomain transcription factor complexes. [PDF]

Biophys J
Jiang Y, Shewchuk AM, Chiu TP, Li J, Kribelbauer-Swietek JF, Gompel N, Rohs R.   +6 more
europepmc   +1 more source

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RepEx: A web server to extract sequence repeats from protein and DNA sequences

Computational Biology and Chemistry, 2019
Evolution builds up new genetic material from existing ones, not in random, but in highly ordered and eloquent patterns. Most of these sequence repeats are revelatory of valuable information contributing to areas of disease research and function of macromolecules, to name a few.
Daliah Michael, Kanagaraj Sekar
exaly   +3 more sources

Aligning a DNA sequence with a protein sequence

Proceedings of the first annual international conference on Computational molecular biology - RECOMB '97, 1997
We develop several algorithms for the problem of aligning DNA sequence with a protein sequence. Our methods account for frameshift errors, but not for introns in the DNA sequence. Thus, they are particularly appropriate for comparing a cDNA sequence that suffers from sequencing errors with an amino acid sequence or a protein sequence database.
Zheng Zhang 0004, William R. Pearson, Webb Miller   +2 more
openaire   +2 more sources

Quantitative DNA Sequencing to Determine the Relative Protein-DNA Binding Constants to Multiple DNA Sequences

Analytical Biochemistry, 1994
DNA sequencing technology was modified into a quantitative assay, which for multiple DNA sequences allowed the simultaneous determination of relative protein-DNA binding constants. The band mobility shift of the protein-DNA binding reactions partitions the mixture of DNA sequences into bound and unbound fractions.
D S, Fields, G D, Stormo
openaire   +2 more sources