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Molecular and in silico analysis of the coat protein of hibiscus chlorotic ringspot virus isolates [PDF]
Journal of Crop Protection, 2023 Hibiscus chlorotic ringspot virus (HCRSV), genus Betacarmovirus, family Tombusviridae, is a common pathogen of hibiscus plants in tropical and subtropical regions. During 2020-2021, leaf samples of Chinese hibiscus Hibiscus rosa-sinensis L. with mottling
Nadia Mosharaf +4 more
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Biomolecules, 2022 With the debut of AlphaFold2, we now can get a highly-accurate view of a reasonable equilibrium tertiary structure of a protein molecule. Yet, a single-structure view is insufficient and does not account for the high structural plasticity of protein ...
Fardina Fathmiul Alam, Amarda Shehu
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Image-based effective feature generation for protein structural class and ligand binding prediction [PDF]
PeerJ Computer Science, 2020 Proteins are the building blocks of all cells in both human and all living creatures of the world. Most of the work in the living organism is performed by proteins.
Nafees Sadique +4 more
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Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15
Communications Chemistry, 2023 Since the 14th Critical Assessment of Techniques for Protein Structure Prediction (CASP14), AlphaFold2 has become the standard method for protein tertiary structure prediction. One remaining challenge is to further improve its prediction.
Jian Liu +5 more
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Reducing Ensembles of Protein Tertiary Structures Generated De Novo via Clustering
Molecules, 2020 Controlling the quality of tertiary structures computed for a protein molecule remains a central challenge in de-novo protein structure prediction. The rule of thumb is to generate as many structures as can be afforded, effectively acknowledging that ...
Ahmed Bin Zaman +3 more
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I 3D3P: an Intelligent 3D Protein Prediction Platform
Proceedings of the International Conference on Applied Innovations in IT, 2022 Proteins are macromolecules consisting of a chain of smaller molecules (i.e. amino acids) known as monomers. Three levels of protein structure are distinguished: primary, secondary and tertiary.
Mohamed Hachem Kermani, Zizette Boufaida
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EasyModel: a user-friendly web-based interface based on MODELLER
Scientific Reports, 2023 Three-dimensional protein structures are invaluable sources of information for the functional annotation of protein molecules. Describing the function of a protein sequence is one of the most common problems in biology.
Seyed Shahriar Arab, Alireza Dantism
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Ultrasonics Sonochemistry, 2023 The effects of air thawing (AT), water immersion thawing (WT), microwave thawing (MT) and ultrasound combined with slightly acidic electrolyzed water thawing (UST) on the myofibrillar protein (MP) properties (surface hydrophobicity, solubility, turbidity,
Dewei Kong +8 more
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Prediction of Protein Tertiary Structure via Regularized Template Classification Techniques
Molecules, 2020 We discuss the use of the regularized linear discriminant analysis (LDA) as a model reduction technique combined with particle swarm optimization (PSO) in protein tertiary structure prediction, followed by structure refinement based on singular value ...
Óscar Álvarez-Machancoses +2 more
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Advances in protein tertiary structure prediction
Biomedical and Biotechnology Research Journal, 2018 Proteins are composed of linear chains of amino acids that form a unique three-dimensional structure in their native environment. Such native structure favors the proteins to perform their biochemical activity.
Tayebeh Farhadi
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