Results 1 to 10 of about 399,396 (198)
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. [PDF]
PLoS ONE, 2011 The advent of next generation sequencing has coincided with a growth in interest in using these approaches to better understand the role of the structure and function of the microbial communities in human, animal, and environmental health.
Patrick D Schloss +2 more
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FASTQuick: rapid and comprehensive quality assessment of raw sequence reads. [PDF]
Gigascience, 2021 Abstract Background Rapid and thorough quality assessment of sequenced genomes on an ultra-high-throughput scale is crucial for successful large-scale genomic studies. Comprehensive quality assessment typically requires full genome alignment, which costs a substantial amount of computational ...
Zhang F, Kang HM.
europepmc +5 more sources
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Scientific Reports, 2021 Third-generation sequencing technologies allow to sequence long reads of tens of kbp, that are expected to solve various problems. However, they display high error rates, currently capped around 10%.
Pierre Morisse +4 more
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De novo characterization of the Lycium ruthenicum transcriptome and analysis of its digital gene expression profiles during fruit development and ripening [PDF]
Archives of Biological Sciences, 2017 Lycium ruthenicum Murr., which belongs to the family Solanaceae, is a resource plant for Chinese traditional medicine and nutraceutical foods. In this study, RNA sequencing was applied to obtain raw reads of L.
Peng Yong, Ma Huiqin, Chen Shangwu
doaj +1 more source
Data in Brief, 2020 The CXCR5 (C-X-C motif chemokine receptor 5) is chemokine transmembrane receptor, acting via its ligand CXCL13 and plays a crucial role in controlling the trafficking of inflammatory cells into and from the sub-retinal space, which contributes to the ...
Madhu Sudhana Saddala +2 more
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Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus [PDF]
PeerJ, 2018 Genome sequencing is rapidly being adopted in reference labs and hospitals for bacterial outbreak investigation and diagnostics where time is critical.
Andrew J. Page, Jacqueline A. Keane
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F1000Research, 2020 The Sweetleaf (Stevia rebaudiana: Asteraceae) is widely grown for use as a sweetener. We present the whole genome sequence and annotation of this species. A total of 146,838,888 paired-end reads consisting of 22.2G bases were obtained by sequencing one
Kathleen O'Neill, Stacy Pirro
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Detection of microRNAs in color space [PDF]
, 2011 MotivationDeep sequencing provides inexpensive opportunities to characterize the transcriptional diversity of known genomes. The AB SOLiD technology generates millions of short sequencing reads in color-space; that is, the raw data is a sequence of ...
Altschul +29 more
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RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds
Genomics Data, 2017 Rafflesia cantleyi, known as one of the world's largest flowers, is a specialised holoparasite due to dramatic morphological modifications. It possesses highly reduced vegetative structure and only appears as a flower for sexual reproduction.
Safoora Amini +6 more
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F1000Research, 2020 Eastern Poison Ivy (Toxicodendron radicans, Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it.
Toby Pirro, Stacy Pirro
doaj +1 more source