{BiQ} Analyzer {HiMod}: An Interactive Software Tool for High-throughput Locus-specific Analysis of 5-Methylcytosine and its Oxidized Derivatives [PDF]
, 2014 Recent data suggest important biological roles for oxidative modifications of methylated cytosines, specifically hydroxymethylation, formylation and carboxylation. Several assays are now available for profiling these DNA modifications genome-wide as well
Becker, D. +5 more
core +2 more sources
Transcriptome and translatome profiles of Streptomyces species in different growth phases. [PDF]
, 2020 Streptomyces are efficient producers of various bioactive compounds, which are mostly synthesized by their secondary metabolite biosynthetic gene clusters (smBGCs).
Cho, Byung-Kwan +6 more
core +1 more source
Genomics, Proteomics & Bioinformatics, 2017 With the rapid development of sequencing technologies towards higher throughput and lower cost, sequence data are generated at an unprecedentedly explosive rate.
Yanqing Wang +22 more
doaj +1 more source
Transcriptional responses in the hepatopancreas of Eriocheir sinensis exposed to deltamethrin.
PLoS ONE, 2017 Deltamethrin is an important pesticide widely used against ectoparasites. Deltamethrin contamination has resulted in a threat to the healthy breeding of the Chinese mitten crab, Eriocheir sinensis. In this study, we investigated transcriptional responses
Zongying Yang +12 more
doaj +1 more source
PyroClean: denoising pyrosequences from protein-coding amplicons for the recovery of interspecific and intraspecific genetic variation. [PDF]
PLoS ONE, 2013 High-throughput parallel sequencing is a powerful tool for the quantification of microbial diversity through the amplification of nuclear ribosomal gene regions.
Ricardo Ramirez-Gonzalez +5 more
doaj +1 more source
DDBJ Activities: Contribution to the Research in Information Biology [PDF]
, 2009 DDBJ (DNA Data Bank of Japan; "http://www.ddbj.nig.ac.jp/":http://www.ddbj.nig.ac.jp/)started its database activities in 1986. From the beginning, DDBJ has been one of INSDC (International Nucleotide Sequence Database Collaboration; "http:/
Hideaki Sugawara +8 more
core +1 more source
Draft genome sequence data of Enterococcus faecium R9, a multiple enterocins-producing strain
Data in Brief, 2023 Food contamination by pathogens results in serious health problems and economic losses. Chemical food preservatives pose a risk to human health when used in food preservation.
Abrar Akbar +5 more
doaj +1 more source
Optimization of miRNA-seq data preprocessing. [PDF]
, 2015 The past two decades of microRNA (miRNA) research has solidified the role of these small non-coding RNAs as key regulators of many biological processes and promising biomarkers for disease.
McPherson, John D +2 more
core +1 more source
Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
Data in Brief, 2020 The data provided in the article includes the sequence of bacterial 16S rRNA gene from a high conservation value forest, logged forest, rubber plantation and oil palm plantation collected at Kelantan river basin.
Rennielyn Rupert +5 more
doaj +1 more source
BATCH-GE : batch analysis of next-generation sequencing data for genome editing assessment [PDF]
, 2016 Targeted mutagenesis by the CRISPR/Cas9 system is currently revolutionizing genetics. The ease of this technique has enabled genome engineering in-vitro and in a range of model organisms and has pushed experimental dimensions to unprecedented proportions.
Boel, Annekatrien +7 more
core +2 more sources