Results 21 to 30 of about 220,837 (312)

Genome sequence data from 17 accessions of Ensete ventricosum, a staple food crop for millions in Ethiopia

Data in Brief, 2018
We present raw sequence reads and genome assemblies derived from 17 accessions of the Ethiopian orphan crop plant enset (Ensete ventricosum (Welw.) Cheesman) using the Illumina HiSeq and MiSeq platforms. Also presented is a catalogue of single-nucleotide
Zerihun Yemataw, Sadik Muzemil, Daniel Ambachew, Leena Tripathi, Kassahun Tesfaye, Alemayheu Chala, Audrey Farbos, Paul O’Neill, Karen Moore, Murray Grant, David J. Studholme   +10 more
doaj   +1 more source

Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide

Data in Brief, 2023
This article reports the Chromobacterium amazonense BASUSDA_45 strain's draft genomic sequence. The bacterium was isolated from cypermethrin pesticide contaminated soil and then the sequencing was carried out.
Md Atikur Rahman, Khaled Mahmud Sujon, Mohammad Tanbir Habib, Md. Forhad Hossain, K.M.K.B. Ferdaus, K.M.F. Hoque, Zennat Ferdousi, Md Abu Reza   +7 more
doaj   +1 more source

Shotgun metagenomic data of microbiomes on plastic fabrics exposed to harsh tropical environments

Data in Brief, 2020
The development of more affordable high-throughput DNA sequencing technologies and powerful bioinformatics is making of shotgun metagenomics a common tool for effective characterization of microbiomes and robust functional genomics. A shotgun metagenomic
Osman Radwan, Oscar N. Ruiz
doaj   +1 more source

Dataset of next-generation sequence reads of nanobody clones in phage display library derived from Indian desert camel (Camelus dromedarius L.)

Data in Brief, 2021
Next-generation sequences (NGS) dataset of nanobody (Nb) clones in a phage display library (PDL) is of immense value as it serves in many different ways, such as: i). estimating the library size, ii).
Somesh Banerjee, Ajit Singh, Jagveer Rawat, Nitish Bansal, Sushila Maan   +4 more
doaj   +1 more source

A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry

BMC Research Notes, 2010
Background Relatively recently, the software KB™ Basecaller has replaced phred for identifying the bases from raw sequence data in DNA sequencing employing dideoxy chemistry. We have measured quantitatively the consequences of that change.
Jiang Hui, Hyman Richard W, Fukushima Marilyn, Davis Ronald W   +3 more
doaj   +1 more source

Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree

Nature Biotechnology, 2023
AbstractCurrent methods for inference of phylogenetic trees require running complex pipelines at substantial computational and labor costs, with additional constraints in sequencing coverage, assembly and annotation quality, especially for large datasets.
David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J. Sedlazeck, Christophe Dessimoz   +4 more
openaire   +5 more sources

RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening

Genomics Data, 2017
Mangosteen (Garcinia mangostana L.) is known for its delectable taste and contains high amount of xanthones which have been reported to possess anti-cancer, anti-inflammatory and other bioactive properties.
Azhani Abdul-Rahman, Hoe-Han Goh, Kok-Keong Loke, Normah Mohd Noor, Wan Mohd Aizat   +4 more
doaj   +1 more source

High-quality draft genome sequence data of six Lactiplantibacillus plantarum subsp. argentoratensis strains isolated from various Greek wheat sourdoughs

Data in Brief, 2021
Lactiplantibacillus plantarum is a species found in a wide range of foods and other commodities. It can be used as starter or adjunct culture in fermented foods. Herein the annotated high-quality draft genome (scaffolds) of six L.
Maria K. Syrokou, Spiros Paramithiotis, Panagiotis N. Skandamis, Eleftherios H. Drosinos, Loulouda Bosnea, Marios Mataragas   +5 more
doaj   +1 more source

High-throughput immune repertoire analysis with IGoR

Nature Communications, 2018
B and T cell receptor diversity can be studied by high-throughput immune receptor sequencing. Here, the authors develop a software tool, IGoR, that calculates the likelihoods of potential V(D)J recombination and somatic hypermutation scenarios from raw ...
Quentin Marcou, Thierry Mora, Aleksandra M. Walczak   +2 more
doaj   +1 more source

First report of bacterial community from a Bat Guano using Illumina next-generation sequencing

Genomics Data, 2015
V4 hypervariable region of 16S rDNA was analyzed for identifying the bacterial communities present in Bat Guano from the unexplored cave — Pnahkyndeng, Meghalaya, Northeast India.
Surajit De Mandal, Zothansanga, Amritha Kumari Panda, Satpal Singh Bisht, Nachimuthu Senthil Kumar   +4 more
doaj   +1 more source