Results 31 to 40 of about 399,495 (297)

Dataset of next-generation sequence reads of nanobody clones in phage display library derived from Indian desert camel (Camelus dromedarius L.)

Data in Brief, 2021
Next-generation sequences (NGS) dataset of nanobody (Nb) clones in a phage display library (PDL) is of immense value as it serves in many different ways, such as: i). estimating the library size, ii).
Somesh Banerjee, Ajit Singh, Jagveer Rawat, Nitish Bansal, Sushila Maan   +4 more
doaj   +1 more source

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease. [PDF]

, 2017
Extended laboratory culture and antimicrobial susceptibility testing timelines hinder rapid species identification and susceptibility profiling of bacterial pathogens associated with bovine respiratory disease, the most prevalent cause of cattle ...
Abdo, Zaid, Aly, Sharif S, Belk, Keith, Blanchard, Patricia C, Davis, Jessica H, Lehenbauer, Terry W, Miller, Michael R, Morley, Paul, Noyes, Noelle, O'Rourke, Sean M, Owen, Joseph R, Prince, Daniel J, Van Eenennaam, Alison L, Young, Amy E   +13 more
core   +2 more sources

A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry

BMC Research Notes, 2010
Background Relatively recently, the software KB™ Basecaller has replaced phred for identifying the bases from raw sequence data in DNA sequencing employing dideoxy chemistry. We have measured quantitatively the consequences of that change.
Jiang Hui, Hyman Richard W, Fukushima Marilyn, Davis Ronald W   +3 more
doaj   +1 more source

Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree

Nature Biotechnology, 2023
AbstractCurrent methods for inference of phylogenetic trees require running complex pipelines at substantial computational and labor costs, with additional constraints in sequencing coverage, assembly and annotation quality, especially for large datasets.
David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J. Sedlazeck, Christophe Dessimoz   +4 more
openaire   +5 more sources

RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening

Genomics Data, 2017
Mangosteen (Garcinia mangostana L.) is known for its delectable taste and contains high amount of xanthones which have been reported to possess anti-cancer, anti-inflammatory and other bioactive properties.
Azhani Abdul-Rahman, Hoe-Han Goh, Kok-Keong Loke, Normah Mohd Noor, Wan Mohd Aizat   +4 more
doaj   +1 more source

The Genome and Methylome of a Subsocial Small Carpenter Bee, Ceratina calcarata [PDF]

, 2016
Understanding the evolution of animal societies, considered to be a major transition in evolution, is a key topic in evolutionary biology. Recently, new gateways for understanding social evolution have opened up due to advances in genomics, allowing for ...
Glastad, Karl M., Hunt, Brendan G., Lawson, Sarah P., Rehan, Sandra M.   +3 more
core   +2 more sources

High-throughput immune repertoire analysis with IGoR

Nature Communications, 2018
B and T cell receptor diversity can be studied by high-throughput immune receptor sequencing. Here, the authors develop a software tool, IGoR, that calculates the likelihoods of potential V(D)J recombination and somatic hypermutation scenarios from raw ...
Quentin Marcou, Thierry Mora, Aleksandra M. Walczak   +2 more
doaj   +1 more source

High-quality draft genome sequence data of six Lactiplantibacillus plantarum subsp. argentoratensis strains isolated from various Greek wheat sourdoughs

Data in Brief, 2021
Lactiplantibacillus plantarum is a species found in a wide range of foods and other commodities. It can be used as starter or adjunct culture in fermented foods. Herein the annotated high-quality draft genome (scaffolds) of six L.
Maria K. Syrokou, Spiros Paramithiotis, Panagiotis N. Skandamis, Eleftherios H. Drosinos, Loulouda Bosnea, Marios Mataragas   +5 more
doaj   +1 more source

PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens. [PDF]

, 2017
Large-scale genetic screens using CRISPR/Cas9 technology have emerged as a major tool for functional genomics. With its increased popularity, experimental biologists frequently acquire large sequencing datasets for which they often do not have an easy ...
Bath, Tyler, Esko, Jeffrey D, Harismendy, Olivier, Kim, Jihoon, Lewis, Nathan E, Spahn, Philipp N, Weiss, Ryan J   +6 more
core   +2 more sources

First report of bacterial community from a Bat Guano using Illumina next-generation sequencing

Genomics Data, 2015
V4 hypervariable region of 16S rDNA was analyzed for identifying the bacterial communities present in Bat Guano from the unexplored cave — Pnahkyndeng, Meghalaya, Northeast India.
Surajit De Mandal, Zothansanga, Amritha Kumari Panda, Satpal Singh Bisht, Nachimuthu Senthil Kumar   +4 more
doaj   +1 more source