Evaluation of DNA barcoding reference databases for marine species in the western and central Pacific Ocean [PDF]
PeerJDNA barcoding is a widely used tool for species identification, with its reliability heavily dependent on reference databases. While the quality of these databases has long been debated, a critical knowledge gap remains in their comprehensive evaluation ...
Yufei Zhou +5 more
doaj +3 more sources
Ten common issues with reference sequence databases and how to mitigate them
Frontiers in BioinformaticsMetagenomic sequencing has revolutionized our understanding of microbiology. While metagenomic tools and approaches have been extensively evaluated and benchmarked, far less attention has been given to the reference sequence database used in metagenomic ...
Samuel D. Chorlton
doaj +3 more sources
The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community [PDF]
Genes, 2020 Yuqi Guo +2 more
exaly +2 more sources
THEREDA – Thermodynamic Reference Database [PDF]
Safety of Nuclear Waste Disposal, 2021 Abstract. Part of the process to ensure the safety of radioactive waste disposal is the predictive modeling of the solubility of all relevant toxic components in a complex aqueous solution. To ensure the reliability of thermodynamic equilibrium modeling as well as to facilitate the comparison of such calculations done by different institutions, it is ...
Moog, H. C. +13 more
openaire +5 more sources
Sketched reference databases for genome-based taxonomy and comparative genomics [PDF]
Brazilian Journal of Biology, 2022 The analysis of curated genomic, metagenomic and proteomic data is of paramount importance in the fields of biology, medicine, education, and bioinformatics.
A. Sánchez-Reyes +1 more
doaj +1 more source
The 'Mangrove Reference Database and Herbarium' [PDF]
Plant Ecology and Evolution, 2010 info:eu-repo/semantics ...
Masso ii Aleman, Sergi +7 more
openaire +5 more sources
THEREDA – Thermodynamic Reference Database
Safety of Nuclear Waste Disposal, 2023 Abstract. Part of the process to ensure the safety of radioactive waste disposal is the predictive modeling of the solubility of all relevant toxic components in a complex aqueous solution. To ensure the reliability of thermodynamic equilibrium modeling and to facilitate the comparison of such calculations done by different institutions, it is ...
Moog, H. C. +14 more
openaire +3 more sources
Update of Atomic Data for the First Three Spectra of Actinium
Atoms, 2022 The present article describes a complete reanalysis of all published data on observed spectral lines and energy levels of the first three spectra of actinium (Ac I–III). In Ac I, three previously determined energy levels have been rejected, 12 new energy
Alexander Kramida
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Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics
Frontiers in Microbiology, 2021 Contaminating sequences in public genome databases is a pervasive issue with potentially far-reaching consequences. This problem has attracted much attention in the recent literature and many different tools are now available to detect contaminants ...
Valérian Lupo +7 more
doaj +1 more source
ACCURACY ASSESSMENT OF DIFFERENT SOIL DATABASES CONCERNING WRB REFERENCE SOIL GROUPS [PDF]
Acta Geographica Debrecina. Landscape & Environment Series, 2016 As a result of international cooperation, the conditions of data access and data usage have been significantly improved during the last two decades. Also, the establishment of web-based geoinformatic infrastructure allowed researchers to share their ...
Dániel Balla +2 more
doaj +1 more source