Results 11 to 20 of about 1,284,441 (182)

RESCRIPt: Reproducible sequence taxonomy reference database management

PLoS Computational Biology, 2021
Nucleotide sequence and taxonomy reference databases are critical resources for widespread applications including marker-gene and metagenome sequencing for microbiome analysis, diet metabarcoding, and environmental DNA (eDNA) surveys.
Michael S. Robeson, Devon R. O’Rourke, Benjamin D. Kaehler, Michal Ziemski, Matthew R. Dillon, Jeffrey T. Foster, Nicholas A. Bokulich   +6 more
doaj   +4 more sources

Development of NIST Atomic Databases and Online Tools

Atoms, 2020
Over the last 25 years, the atomic standard reference databases and online tools developed at the National Institute of Standards and Technology (NIST) have provided users around the world with the highest-quality data on various atomic parameters (e.g.,
Yuri Ralchenko, Alexander Kramida
doaj   +3 more sources

THEREDA – Thermodynamic Reference Database [PDF]

Safety of Nuclear Waste Disposal, 2021
Abstract. Part of the process to ensure the safety of radioactive waste disposal is the predictive modeling of the solubility of all relevant toxic components in a complex aqueous solution. To ensure the reliability of thermodynamic equilibrium modeling as well as to facilitate the comparison of such calculations done by different institutions, it is ...
Moog, H. C., Scharge, T., Seher, H., Bok, F., Brendler, V., Richter, A., Wissmeier, L., Altmaier, M., Gaona, X., Cevirim-Papaioannou, N., Freyer, D., Pannach, M., Sohr, J., Voigt, W.   +13 more
openaire   +9 more sources

Sketched reference databases for genome-based taxonomy and comparative genomics [PDF]

Brazilian Journal of Biology, 2022
The analysis of curated genomic, metagenomic and proteomic data is of paramount importance in the fields of biology, medicine, education, and bioinformatics.
A. Sánchez-Reyes, M. G. Fernández-López   +1 more
doaj   +1 more source

The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community. [PDF]

Genes (Basel), 2020
Sierra MA, Li Q, Pushalkar S, Paul B, Sandoval TA, Kamer AR, Corby P, Guo Y, Ruff RR, Alekseyenko AV, Li X, Saxena D.   +11 more
europepmc   +2 more sources

THEREDA – Thermodynamic Reference Database

Safety of Nuclear Waste Disposal, 2023
Abstract. Part of the process to ensure the safety of radioactive waste disposal is the predictive modeling of the solubility of all relevant toxic components in a complex aqueous solution. To ensure the reliability of thermodynamic equilibrium modeling and to facilitate the comparison of such calculations done by different institutions, it is ...
Moog, H. C., Scharge, T., Seher, H., Bok, F., Brendler, V., Richter, A., Wissmeier, L., Henneberg, M., Altmaier, M., Gaona, X., Cevirim-Papaioannou, N., Freyer, D., Pannach, M., Sohr, J., Voigt, W.   +14 more
openaire   +3 more sources

Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics

Frontiers in Microbiology, 2021
Contaminating sequences in public genome databases is a pervasive issue with potentially far-reaching consequences. This problem has attracted much attention in the recent literature and many different tools are now available to detect contaminants ...
Valérian Lupo, Valérian Lupo, Mick Van Vlierberghe, Hervé Vanderschuren, Frédéric Kerff, Denis Baurain, Luc Cornet, Luc Cornet   +7 more
doaj   +1 more source

Update of Atomic Data for the First Three Spectra of Actinium

Atoms, 2022
The present article describes a complete reanalysis of all published data on observed spectral lines and energy levels of the first three spectra of actinium (Ac I–III). In Ac I, three previously determined energy levels have been rejected, 12 new energy
Alexander Kramida
doaj   +1 more source

Human Protein Reference Database--2009 update [PDF]

Nucleic Acids Research, 2009
Human Protein Reference Database (HPRD--http://www.hprd.org/), initially described in 2003, is a database of curated proteomic information pertaining to human proteins. We have recently added a number of new features in HPRD. These include PhosphoMotif Finder, which allows users to find the presence of over 320 experimentally verified phosphorylation ...
Keshava Prasad, T. S., Goel, Renu, Kandasamy, Kumaran, Keerthikumar, Shivakumar, Kumar, Sameer, Mathivanan, Suresh, Telikicherla, Deepthi, Raju, Rajesh, Shafreen, Beema, Venugopal, Abhilash, Balakrishnan, Lavanya, Marimuthu, Arivusudar, Banerjee, Sutopa, Somanathan, Devi S., Sebastian, Aimy, Rani, Sandhya, Ray, Somak, Harrys Kishore, C. J., Kanth, Sashi, Ahmed, Mukhtar, Kashyap, Manoj K., Mohmood, Riaz, Ramachandra, Y. L., Krishna, V., Rahiman, B. Abdul, Mohan, Sujatha, Ranganathan, Prathibha, Ramabadran, Subhashri, Chaerkady, Raghothama, Pandey, Akhilesh   +29 more
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Human protein reference database--2006 update [PDF]

Nucleic Acids Research, 2006
Human Protein Reference Database (HPRD) (http://www.hprd.org) was developed to serve as a comprehensive collection of protein features, post-translational modifications (PTMs) and protein-protein interactions. Since the original report, this database has increased to >20 000 proteins entries and has become the largest database for literature-derived ...
Mishra, Gopa R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, Shubha, Bala, P., Shivakumar, K., Anuradha, N., Reddy, Raghunath, Raghavan, T. Madhan, Menon, Shalini, Hanumanthu, G., Gupta, Malvika, Upendran, Sapna, Gupta, Shweta, Mahesh, M., Jacob, Bincy, Mathew, Pinky, Chatterjee, Pritam, Arun, K. S., Sharma, Salil, Chandrika, K. N., Deshpande, Nandan, Palvankar, Kshitish, Raghavnath, R., Krishnakanth, R., Karathia, Hiren, Rekha, B., Nayak, Rashmi, Vishnupriya, G., Kumar, H. G. Mohan, Nagini, M., Kumar, G. S. Sameer, Jose, Rojan, Deepthi, P., Mohan, S. Sujatha, Gandhi, T. K. B., Harsha, H. C., Deshpande, Krishna S., Sarker, Malabika, Prasad, T. S. Keshava, Pandey, Akhilesh   +41 more
openaire   +2 more sources