Results 81 to 90 of about 5,571,829 (332)
Refined Pichia pastoris reference genome sequence [PDF]
Journal of Biotechnology, 2016 Strains of the species Komagataella phaffii are the most frequently used "Pichia pastoris" strains employed for recombinant protein production as well as studies on peroxisome biogenesis, autophagy and secretory pathway analyses. Genome sequencing of several different P.Sturmberger, Lukas; Chappell, Thomas; Geier, Martina; Krainer, Florian; Day, Kasey J.; Vide, Ursa; Trstenjak, Sara; Schiefer, Anja; Richardson, Toby; Soriaga, Leah; Darnhofer, Barbara; Birner-Gruenberger, Ruth; Glick, Benjamin S.; Tolstorukov, Ilya; Cregg, James; Madden, Knut; Glieder, Anton +17 moreopenaire +2 more sourcesReference genome and comparative genome analysis for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccine [PDF]
, 2019 Background: Mycobacterium bovis bacillus Calmette-Guerin (M. bovis BCG) is the only vaccine available against tuberculosis (TB). In an effort to standardize the vaccine production, three substrains, i.e. BCG Danish 1331, Tokyo 172-1 and Russia BCG-1 were Borgers, Katlyn, Callewaert, Nico, Festjens, Nele, Lin, Yao-Cheng, Michielsen, Gitte, Ou, Jheng-Yang, Plets, Evelyn, Tiels, Petra, Van Hecke, Annelies, Zheng, Po-Xing +9 morecore +2 more sourcesThe value of new genome references [PDF]
Experimental Cell Research, 2017 Genomic information has become a ubiquitous and almost essential aspect of biological research. Over the last 10-15 years, the cost of generating sequence data from DNA or RNA samples has dramatically declined and our ability to interpret those data increased just as remarkably.Kim C, Worley, Stephen, Richards, Jeffrey, Rogers +2 moreopenaire +2 more sourcesFAIR Header Reference genome: A TRUSTworthy standard
Briefings in Bioinformatics, 2023 The lack of interoperable data standards among reference genome data-sharing platforms inhibits cross-platform analysis while increasing the risk of data provenance loss. Here, we describe the FAIR-bioHeaders Reference genome (FHR), a metadata standard guided by the principles of Findability, Accessibility, Interoperability, and Reuse (FAIR) in ...Adam Wright, Mark D Wilkinson, Christopher Mungall, Scott Cain, Stephen Richards, Paul Sternberg, Ellen Provin, Jonathan L Jacobs, Scott Geib, Daniela Raciti, Karen Yook, Lincoln Stein, David C Molik +12 moreopenaire +3 more sourcesWhat's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual. [PDF]
, 2015 BackgroundNext-generation sequencing projects commonly commence by aligning reads to a reference genome assembly. While improvements in alignment algorithms and computational hardware have greatly enhanced the efficiency and accuracy of alignments, a ...Alexander, Leeson J, Decker, Jared E, Kim, JaeWoo, Medrano, Juan F, Schnabel, Robert D, Schroeder, Steven G, Sonstegard, Tad S, Taylor, Jeremy F, Tizioto, Polyana C, Whitacre, Lynsey K +9 morecore +1 more sourceThe European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
bioRxivA global genome database of all of Earth’s species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information ...Ann M. Mc Cartney, G. Formenti, Alice Mouton, C. Ciofi, Robert M. Waterhouse, Camila J. Mazzoni, Diego De Panis, Luisa S Schlude Marins, Henrique G. Leitão, Genevieve Diedericks, Joseph Kirangwa, M. Morselli, Judit Salces, Nuria Escudero, Alessio Iannucci, C. Natali, H. Svardal, Rosa Fernández, Tim de Pooter, Geert Joris, Mojca Strazisar, J. Wood, Katie E Herron, O. Seehausen, Phillip C. Watts, Felix Shaw, Robert P. Davey, Alice Minotto, Jose Maria Fernandez Gonzalez, A. Bohne, C. Alegria, T. Alioto, P. Alves, I. Amorim, J. Aury, Niclas Backstrom, P. Baldrian, L. Ballarin, L. Baltrūnaitė, E. Barta, Bertrand Bed’hom, Caroline Belser, J. Bergsten, Laurie Bertrand, Helena Bilandija, Mahesh Binzer-Panchal, I. Bista, Mark Blaxter, P. Borges, Guilherme Borges Dias, M. Bosse, Thomas Brown, R. Bruggmann, Elena Buena-Atienza, Josephine Burgin, E. Bužan, Nicolas Casadei, M. Chiara, S. Chozas, Fedor Čiampor, A. Crottini, C. Cruaud, F. Cruz, L. Dalén, Alessio De Biase, J. del Campo, T. Delić, A. Dennis, M. Derks, M. Diroma, M. Djan, S. Duprat, Klara Eleftheriadi, P. Feulner, Jean‐François Flot, G. Forni, B. Fosso, Pascal Fournier, C. Fournier-Chambrillon, T. Gabaldón, Shilpa Garg, C. Gissi, L. Giupponi, J. Gómez-Garrido, Josefa González, M. Grilo, B. Gruening, Thomas Guerin, Nadège Guiglielmoni, M. Gut, M. Haesler, C. Hahn, B. Halpern, Peter W. Harrison, Julia Heintz, M. Hindrikson, Jacob Hoglund, K. Howe, Graham M Hughes, B. Istace, Mark J. Cock, Franc Jancekovic, Z. Jónsson, Sagane Joye-Dind, Janne J. Koskimaki, B. Kryštufek, J. Kubacka, Heiner Kuhl, S. Kusza, K. Labadie, Meri Lahteenaro, H. Lantz, A. Lavrinienko, L. Leclère, R. Lopes, Ole Madsen, Ghislaine Magdelenat, G. Magoga, T. Manousaki, T. Mappes, J. P. Marques, Gemma I Martinez Redondo, Florian Maumus, H. Megens, J. Melo‐Ferreira, S. L. Mendes, M. Montagna, João M. Moreno, Mai-Britt Mosbech, Mónica Moura, Z. Musilová, Eugene W. Myers, W. Nash, A. Nater, Pamela Nicholson, Manuel Niell, R. Nijland, B. Noel, K. Norén, Pedro H. Oliveira, Remi-André Olsen, L. Ometto, S. Ossowski, V. Palinauskas, S. Pálsson, Jerome P Panibe, J. Paupério, Martina Pavlek, Emilie Payen, J. Pawłowska, J. Pellicer, G. Pesole, João Pimenta, Martin Pippel, Anna Maria Pirttila, N. Poulakakis, J. Rajan, R. Rego, Roberto Resendes, Philipp Resl, A. Riesgo, Patrik Rodin-Morch, A. E. Soares, Carlos Rodríguez Fernandes, M. Romeiras, Guilherme Roxo, Lukas Ruber, M. Ruiz-López, U. Saarma, L. P. Silva, M. Sim-Sim, Lucile Soler, Vítor C. Sousa, Carla Sousa Santos, A. Spada, Milomir Stefanović, V. Stéger, Josefin Stiller, Matthias Stock, T. Struck, Hiranya Sudasinghe, Riikka Tapanainen, C. Tellgren-Roth, H. Trindade, Yevhen Tukalenko, Ilenia Urso, B. Vacherie, Steven M. Van Belleghem, K. van Oers, Carlos Vargas-Chávez, N. Veličković, N. Vella, A. Vella, C. Vernesi, S. Vicente, Sara Villa, Olga Vinnere Pettersson, Filip A. M. Volckaert, Judit Voros, P. Wincker, S. Winkler +200 moresemanticscholar +1 more sourceLimitations of the Human Reference Genome for Personalized Genomics
PLoS ONE, 2012 Data from the 1000 genomes project (1KGP) and Complete Genomics (CG) have dramatically increased the numbers of known genetic variants and challenge several assumptions about the reference genome and its uses in both clinical and research settings. Specifically, 34% of published array-based GWAS studies for a variety of diseases utilize probes that ...Jeffrey A Rosenfeld, Christopher E Mason, Todd M Smith +2 moreopenaire +4 more sourcesGenomic Characterization of a Wild-Type Bovine alphaherpesvirus 1 (BoAHV-1) Strain Isolated in an Outbreak in Central Italy
VirusesBovine alphaherpesvirus-1 (BoAHV-1) infection is common in cattle worldwide. However, information on the spread of BoAHV-1-circulating strains in Italy remains limited.Stefano Petrini, Valentina Curini, Cecilia Righi, Cesare Cammà, Valeria Di Lollo, Elena Tinelli, Luana Fiorella Mincarelli, Elisabetta Rossi, Giulia Costantino, Barbara Secondini, Silvia Pirani, Monica Giammarioli, Francesco Feliziani +12 moredoaj +1 more source
