Results 51 to 60 of about 11,619 (200)

SNAP2 datasets for the Resistome

, 2020
SNAP2 datasets for the Resistome; these are varient effect predictions for most of the proteome. Files should be placed under inputs/protein_predictions according the instructions provided on the Resistome repo website.
Winkler, James
core   +1 more source

Environmental and Anthropogenic Factors Shape the Snow Microbiome and Antibiotic Resistome

Frontiers in Microbiology, 2022
Winter tourism can generate environmental pollution and affect microbial ecology in mountain ecosystems. This could stimulate the development of antibiotic resistance in snow and its dissemination through the atmosphere and through snow melting.
Concepcion Sanchez-Cid, Concepcion Sanchez-Cid, Christoph Keuschnig, Karol Torzewski, Łukasz Stachnik, Daniel Kępski, Bartłomiej Luks, Adam Nawrot, Adam Nawrot, Przemysław Niedzielski, Timothy M. Vogel, Catherine Larose   +11 more
doaj   +1 more source

Effects of Probiotic Supplementation on the Gut Microbiota and Antibiotic Resistome Development in Preterm Infants [PDF]

, 2018
Objectives: In 2014 probiotic supplementation (Lactobacillus acidophilus and Bifidobacterium longum subspecies infantis; Infloran®) was introduced as standard of care to prevent necrotizing enterocolitis (NEC) in extremely preterm infants in Norway.
Pedersen, Tanja, Willassen, Nils Peder, Esaiassen, Eirin, Rettedal, Siren, Støen, Ragnhild, Hjerde, Erik, Nakstad, Britt, Klingenberg, Claus, Cavanagh, Jorunn Pauline, Andresen, Jannicke Hanne   +9 more
core   +1 more source

Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers

Genome Medicine, 2021
Background Antimicrobial-resistant bacteria and their antimicrobial resistance (AMR) genes can spread by hitchhiking in human guts. International travel can exacerbate this public health threat when travelers acquire AMR genes endemic to their ...
Alaric W. D’Souza, Manish Boolchandani, Sanket Patel, Gianluca Galazzo, Jarne M. van Hattem, Maris S. Arcilla, Damian C. Melles, Menno D. de Jong, Constance Schultsz, COMBAT Consortium, Gautam Dantas, John Penders   +11 more
doaj   +1 more source

PRAP: Pan Resistome analysis pipeline [PDF]

BMC Bioinformatics, 2020
Abstract Background Antibiotic resistance genes (ARGs) can spread among pathogens via horizontal gene transfer, resulting in imparities in their distribution even within the same species. Therefore, a pan-genome approach to analyzing resistomes is necessary for thoroughly characterizing patterns of ARGs distribution within particular pathogen ...
Yichen He, Xiujuan Zhou, Ziyan Chen, Xiangyu Deng, Andrew Gehring, Hongyu Ou, Lida Zhang, Xianming Shi   +7 more
openaire   +4 more sources

Limited dissemination of the wastewater treatment plant core resistome [PDF]

, 2015
Horizontal gene transfer is a major contributor to the evolution of bacterial genomes and can facilitate the dissemination of antibiotic resistance genes between environmental reservoirs and potential pathogens.
Albertsen, Mads, Per Halkjær Nielsen, Ellabaan, Mostafa, Munck, Christian, Telke, Amar, Ellabaan, Mostafa M Hashim, Mads Albertsen, Morten O. A. Sommer, Nielsen, Per Halkjær, Christian Munck, Sommer, Morten Otto Alexander, Amar Telke, Mostafa Ellabaan, Albertsen, Mads; id_orcid, Sommer, Morten O. A.   +14 more
core   +1 more source

Bacteriophages as vehicles of the resistome in cystic fibrosis [PDF]

Journal of Antimicrobial Chemotherapy, 2011
Environmental microbial communities and human microbiota represent a huge reservoir of mobilizable genes, the 'mobilome', including a pool of genes encoding antimicrobial resistance, the 'resistome'. Whole-genome sequencing of bacterial genomes from cystic fibrosis (CF) patients has demonstrated that bacteriophages contribute significantly to bacterial
Rolain, Jean-Marc, Fancello, Laura, Desnues, Christelle, Raoult, Didier   +3 more
openaire   +4 more sources

Social demographics determinants for resistome and microbiome variation of a multiethnic community in Southern Malaysia

npj Biofilms and Microbiomes, 2023
The prevalence of antibiotic-resistant bacteria in Southeast Asia is a significant concern, yet there is limited research on the gut resistome and its correlation with lifestyle and environmental factors in the region. This study aimed to profile the gut
J. Dwiyanto, M. A. L. Huët, M. H. Hussain, T. T. Su, J. B. L. Tan, K. Y. Toh, J. W. J. Lee, S. Rahman, C. W. Chong   +8 more
doaj   +1 more source

Effects of early-life antibiotics on the developing infant gut microbiome and resistome: a randomized trial

Nature Communications, 2022
Broad-spectrum antibiotics for suspected early-onset neonatal sepsis (sEONS) may have pronounced effects on gut microbiome development and selection of antimicrobial resistance when administered in the first week of life, during the assembly phase of the
M. Reyman, M. V. van Houten, Rebecca L. Watson, M. Chu, K. Arp, W. D. de Waal, I. Schiering, F. Plötz, Rob J. L. Willems, W. van Schaik, E. Sanders, D. Bogaert   +11 more
semanticscholar   +1 more source

Validated predictive modelling of the environmental resistome [PDF]

The ISME Journal, 2015
Abstract Multi-drug-resistant bacteria pose a significant threat to public health. The role of the environment in the overall rise in antibiotic-resistant infections and risk to humans is largely unknown. This study aimed to evaluate drivers of antibiotic-resistance levels across the River Thames catchment, model key biotic, spatial ...
Amos, Gregory C.A., Gozzard, Emma, Carter, Charlotte E., Mead, Andrew, Bowes, Mike J., Hawkey, Peter M., Zhang, Lihong, Singer, Andrew C., Gaze, William H., Wellington, Elizabeth M.H.   +9 more
openaire   +5 more sources