Results 61 to 70 of about 9,541,112 (326)
Cooperativity and Interdependency between RNA Structure and RNA–RNA Interactions
Non-Coding RNA, 2021 Complex RNA–RNA interactions are increasingly known to play key roles in numerous biological processes from gene expression control to ribonucleoprotein granule formation.
Ilias Skeparnias, Jinwei Zhang
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Base-specific spin-labeling of RNA for structure determination [PDF]
, 2007 To facilitate the measurement of intramolecular distances in solvated RNA systems, a combination of spin-labeling, electron paramagnetic resonance (EPR), and molecular dynamics (MD) simulation is presented. The fairly rigid spin label 2,2,5,5-tetramethyl-
Olav Schiemann +16 more
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HIGH-THROUGHPUT METHODS FOR INTERROGATION OF RNA TERTIARY STRUCTURE [PDF]
, 2021 RNAs encode information in not only primary sequence but also higher orderstructure. Transcriptome-level investigations of RNA structure and function by chemicalprobing have been largely limited to secondary structure, as current probing methodslack the ...
Ehrhardt, Jeffrey
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The ARTS web server for aligning RNA tertiary structures [PDF]
Nucleic Acids Research, 2006 RNA molecules with common structural features may share similar functional properties. Structural comparison of RNAs and detection of common substructures is, thus, a highly important task. Nevertheless, the current available tools in the RNA community provide only a partial solution, since they either work at the 2D level or are suitable for detecting
Oranit Dror +2 more
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Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches. [PDF]
PLoS ONE, 2013 The tertiary motifs in complex RNA molecules play vital roles to either stabilize the formation of RNA 3D structure or to provide important biological functionality to the molecule.
Sri D Appasamy +2 more
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Hayati Journal of Biosciences, 2022 Tilapia (Oreochromis niloticus) is an important fisheries commodity. Scientific efforts have been done to increase its quality. One of them is staging a premium diet such as a fat-enriched diet.
Arli Aditya Parikesit +3 more
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Automated extraction and classification of RNA tertiary structure cyclic motifs
Nucleic Acids Research, 2006 A minimum cycle basis of the tertiary structure of a large ribosomal subunit (LSU) X-ray crystal structure was analyzed. Most cycles are small, as they are composed of 3- to 5 nt, and repeated across the LSU tertiary structure.
S. Lemieux, F. Major
semanticscholar +1 more source
Modeling RNA tertiary structure motifs by graph-grammars [PDF]
Nucleic Acids Research, 2007 A new approach, graph-grammars, to encode RNA tertiary structure patterns is introduced and exemplified with the classical sarcin-ricin motif. The sarcin-ricin motif is found in the stem of the crucial ribosomal loop E (also referred to as the sarcin-ricin loop), which is sensitive to the alpha-sarcin and ricin toxins. Here, we generate a graph-grammar
St-Onge, Karine +3 more
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A comprehensive comparison of comparative RNA structure prediction approaches [PDF]
, 2004 Gardner PP, Giegerich R. A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics. 2004;5(1): 140.Background: An increasing number of researchers have released novel RNA structure analysis and prediction ...
Giegerich, R. +7 more
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3dRNA: Building RNA 3D structure with improved template library
Computational and Structural Biotechnology Journal, 2020 Most of computational methods of building RNA tertiary structure are template-based. The template-based methods usually can give more accurate 3D structures due to the use of native 3D templates, but they cannot work if the 3D templates are not available.
Yi Zhang, Jun Wang, Yi Xiao
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