Results 1 to 10 of about 1,530 (117)
Frontiers in Genetics, 2019 In recent years, obtaining RNA secondary structure information has played an important role in RNA and gene function research. Although some RNA secondary structures can be gained experimentally, in most cases, efficient, and accurate computational ...
Hao Zhang +6 more
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Structural 3D Domain Reconstruction of the RNA Genome from Viruses with Secondary Structure Models
Viruses, 2021 Three-dimensional RNA domain reconstruction is important for the assembly, disassembly and delivery functionalities of a packed proteinaceus capsid. However, to date, the self-association of RNA molecules is still an open problem. Recent chemical probing
Simón Poblete, Horacio V. Guzman
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Long non-coding RNA-polycomb intimate rendezvous [PDF]
Open Biology, 2020 The interaction between polycomb-repressive complexes 1/2 (PRC1/2) and long non-coding RNA (lncRNA), such as the X inactive specific transcript Xist and the HOX transcript antisense RNA (HOTAIR), has been the subject of intense debate.
Andrea Cerase, Gian Gaetano Tartaglia
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BMC Bioinformatics, 2021 Background The functions of RNA molecules are mainly determined by their secondary structures. These functions can also be predicted using bioinformatic tools that enable the alignment of multiple RNAs to determine functional domains and/or classify RNA ...
Tomasz Woźniak +3 more
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RNA Secondary Structure Prediction [PDF]
Current Protocols in Nucleic Acid Chemistry, 2000 AbstractDetails for predicting secondary structure of RNA sequences using free energy minimization are given. Protocols present the use of the RNAstructure computer program (for PCs) and the mfold server (for Unix platforms). The minimum free energy structure and a set of suboptimal structures with similar free energies are predicted.
Mathews, David H. +2 more
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RNA secondary structure factorization in prime tangles
BMC Bioinformatics, 2022 Background Due to its key role in various biological processes, RNA secondary structures have always been the focus of in-depth analyses, with great efforts from mathematicians and biologists, to find a suitable abstract representation for modelling its ...
Daniele Marchei, Emanuela Merelli
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Computational and Structural Biotechnology Journal, 2022 RNA secondary structures can carry out essential cellular functions alone or interact with one another to form the hierarchical tertiary structures.
Tzu-Hsien Yang +3 more
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Widespread selection for extremely high and low levels of secondary structure in coding sequences across all domains of life [PDF]
Open Biology, 2019 Codon composition, GC content and local RNA secondary structures can have a profound effect on gene expression, and mutations affecting these parameters, even though they do not alter the protein sequence, are not neutral in terms of selection.
Daniel Gebert +2 more
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RNA secondary structure design [PDF]
Physical Review E, 2007 11 pages, 10 ...
Burghardt, Bernd, Hartmann, Alexander K.
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Designing RNA Secondary Structures Is Hard [PDF]
Journal of Computational Biology, 2020 A ribonucleic acid (RNA) sequence is a word over an alphabet on four elements { A , C , G
Bonnet, Edouard +2 more
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