Results 11 to 20 of about 10,995,303 (306)
RNA movies: visualizing RNA secondary structure spaces. [PDF]
Bioinformatics, 1999 Abstract MOTIVATION: RNA Movies is a system for the visualization of RNA secondary structure spaces. Its input is a script consisting of primary and secondary structure information. From this script, the system fully automatically generates animated graphical structure representations.
Evers, Dirk J., Giegerich, Robert
openaire +6 more sources
RNA Secondary Structure Prediction [PDF]
Current Protocols in Nucleic Acid Chemistry, 2000 AbstractDetails for predicting secondary structure of RNA sequences using free energy minimization are given. Protocols present the use of the RNAstructure computer program (for PCs) and the mfold server (for Unix platforms). The minimum free energy structure and a set of suboptimal structures with similar free energies are predicted.
Mathews, David H. +2 more
openaire +5 more sources
RNA secondary structure design [PDF]
Physical Review E, 2007 11 pages, 10 ...
Burghardt, Bernd, Hartmann, Alexander K.
openaire +4 more sources
Designing RNA Secondary Structures Is Hard [PDF]
Journal of Computational Biology, 2020 A ribonucleic acid (RNA) sequence is a word over an alphabet on four elements { A , C , G
Bonnet, Edouard +2 more
openaire +6 more sources
Viruses, 2020 RNA secondary structures play diverse roles in positive-sense (+) RNA virus infections, but those located with the replication protein coding sequence can be difficult to investigate.
Rong Sun +3 more
doaj +1 more source
Scientific Reports, 2023 The non-coding RNA secondary structure largely determines its function. Hence, accuracy in structure acquisition is of great importance. Currently, this acquisition primarily relies on various computational methods.
Qi Zhao +7 more
doaj +1 more source
Efficient drawing of RNA secondary structure
Journal of Graph Algorithms and Applications, 2006 In this paper, we propose a new layout algorithm that draws the secondary structure of a Ribonucleic Acid (RNA) automatically according to some of the biologists' aesthetic criteria.
David Auber +3 more
doaj +1 more source
Probing in vivo RNA Structure With Optimized DMS-MaPseq in Rice
Frontiers in Plant Science, 2022 RNA transcripts form various secondary and tertiary structures that have a wide range of regulatory functions. Several methods have been developed to profile in vivo RNA secondary structure in prokaryotes and eukaryotes.
Qiongli Jin +4 more
doaj +1 more source
Pseudoknots in RNA secondary structures
Proceedings of the fourth annual international conference on Computational molecular biology, 2000 <p>RNA molecules are sequences of nucleotides that serve as more than mere intermediaries between DNA and proteins, e.g. as catalytic molecules. Computational prediction of RNA secondary structure is among the few structure prediction problems that can be solved satisfactorily in polynomial time. Most work has been done to predict structures that
Rune B. Lyngsø +1 more
openaire +2 more sources
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs [PDF]
, 2010 Theis C, Janssen S, Giegerich R. Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. In: Moulton V, Singh M, eds. Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Lecture Notes in Bioinformatics. Vol
Corinna Theis +7 more
core +1 more source