Results 11 to 20 of about 517,188 (256)

Long non-coding RNA-polycomb intimate rendezvous [PDF]

Open Biology, 2020
The interaction between polycomb-repressive complexes 1/2 (PRC1/2) and long non-coding RNA (lncRNA), such as the X inactive specific transcript Xist and the HOX transcript antisense RNA (HOTAIR), has been the subject of intense debate.
Andrea Cerase, Gian Gaetano Tartaglia
doaj   +1 more source

Enhanced RNA secondary structure prediction through integrative deep learning and structural context analysis. [PDF]

Nucleic Acids Res
Wang Y, Shen Y, Li J, Wang T, Peng J, Shang X.   +5 more
europepmc   +2 more sources

RNA Secondary Structure Prediction [PDF]

Current Protocols in Nucleic Acid Chemistry, 2000
AbstractDetails for predicting secondary structure of RNA sequences using free energy minimization are given. Protocols present the use of the RNAstructure computer program (for PCs) and the mfold server (for Unix platforms). The minimum free energy structure and a set of suboptimal structures with similar free energies are predicted.
Mathews, David H., Turner, Douglas H., Zuker, Michael   +2 more
openaire   +5 more sources

RNAlign2D: a rapid method for combined RNA structure and sequence-based alignment using a pseudo-amino acid substitution matrix

BMC Bioinformatics, 2021
Background The functions of RNA molecules are mainly determined by their secondary structures. These functions can also be predicted using bioinformatic tools that enable the alignment of multiple RNAs to determine functional domains and/or classify RNA ...
Tomasz Woźniak, Małgorzata Sajek, Jadwiga Jaruzelska, Marcin Piotr Sajek   +3 more
doaj   +1 more source

SSRTool: A web tool for evaluating RNA secondary structure predictions based on species-specific functional interpretability

Computational and Structural Biotechnology Journal, 2022
RNA secondary structures can carry out essential cellular functions alone or interact with one another to form the hierarchical tertiary structures.
Tzu-Hsien Yang, Yu-Cian Lin, Min Hsia, Zhan-Yi Liao   +3 more
doaj   +1 more source

RNA secondary structure design [PDF]

Physical Review E, 2007
11 pages, 10 ...
Burghardt, Bernd, Hartmann, Alexander K.
openaire   +4 more sources

Designing RNA Secondary Structures Is Hard [PDF]

Journal of Computational Biology, 2020
A ribonucleic acid (RNA) sequence is a word over an alphabet on four elements { A , C , G
Édouard Bonnet, Pawel Rzazewski, Florian Sikora   +2 more
openaire   +5 more sources

Probing in vivo RNA Structure With Optimized DMS-MaPseq in Rice

Frontiers in Plant Science, 2022
RNA transcripts form various secondary and tertiary structures that have a wide range of regulatory functions. Several methods have been developed to profile in vivo RNA secondary structure in prokaryotes and eukaryotes.
Qiongli Jin, Linqi Zhang, Saiyan Hu, Guangbo Wei, Zhiye Wang   +4 more
doaj   +1 more source

Efficient drawing of RNA secondary structure

Journal of Graph Algorithms and Applications, 2006
In this paper, we propose a new layout algorithm that draws the secondary structure of a Ribonucleic Acid (RNA) automatically according to some of the biologists' aesthetic criteria.
David Auber, Maylis Delest, Jean-Philippe Domenger, Serge Dulucq   +3 more
doaj   +1 more source

Translation-Independent Roles of RNA Secondary Structures within the Replication Protein Coding Region of Turnip Crinkle Virus

Viruses, 2020
RNA secondary structures play diverse roles in positive-sense (+) RNA virus infections, but those located with the replication protein coding sequence can be difficult to investigate.
Rong Sun, Shaoyan Zhang, Limin Zheng, Feng Qu   +3 more
doaj   +1 more source