Results 41 to 50 of about 10,995,303 (306)

Classifying Conserved RNA Secondary Structures With Pseudoknots by Vector-Edit Distance

IEEE Access, 2021
Secondary structures have been proved to relate with the great functional diversity of RNA. There have been many studies to predict and compare the RNA secondary structures. However, fast and accurate comparison of RNA secondary structures with arbitrary
Liyu Huang, Qingfeng Chen, Yongjie Li, Cheng Luo   +3 more
doaj   +1 more source

Evaluation of the effect of RNA secondary structure on Cas13d-mediated target RNA cleavage. [PDF]

Mol Ther Nucleic Acids
The clustered regularly interspaced short palindromic repeats (CRISPR)-Cas13d system was adapted as a powerful tool for targeting viral RNA sequences, making it a promising approach for antiviral strategies.
Hussein M, Liu Y, Vink M, Kroon PZ, Das AT, Berkhout B, Herrera-Carrillo E.   +6 more
europepmc   +2 more sources

A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B [PDF]

, 2008
The genome of hepatitis C virus (HCV) contains cis-acting replication elements (CREs) comprised of RNA stem-loop structures located in both the 5' and 3' non-coding regions (NCR), and in the NS5B coding sequence.
Diviney, Sinéad, Elliot, R., Evans, David John, Evans, D., Armstrong, V, Tuplin, Andrew, Evans, D.J., Struthers, Madeleine, Struthers, M., Elliott, Richard M., Diviney, S., Tuplin, A., Armstrong, V., Struthers, M, Simmonds, Peter, Elliott, Richard Michael, Armstrong, Victoria, Tuplin, A, Evans, David J., Simmonds, P., Diviney, S, Elliott, R.M., Simmonds, P, Evans, David John; id_orcid   +23 more
core   +1 more source

Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism [PDF]

, 2010
For a long time it has been assumed that the decay of RNA in eukaryotes is mainly carried out by exoribonucleases, which is in contrast to bacteria, where endoribonucleases are well documented to initiate RNA degradation.
Tomecki, Rafał, Dziembowski, Andrzej
core   +3 more sources

RNA secondary structure prediction with convolutional neural networks

BMC Bioinformatics, 2022
Background Predicting the secondary, i.e. base-pairing structure of a folded RNA strand is an important problem in synthetic and computational biology.
Mehdi Saman Booy, Alexander Ilin, Pekka Orponen   +2 more
doaj   +1 more source

In Vivo and In Vitro Genome-Wide Profiling of RNA Secondary Structures Reveals Key Regulatory Features in Plasmodium falciparum

Frontiers in Cellular and Infection Microbiology, 2021
It is widely accepted that the structure of RNA plays important roles in a number of biological processes, such as polyadenylation, splicing, and catalytic functions. Dynamic changes in RNA structure are able to regulate the gene expression programme and
Yanwei Qi, Yuhong Zhang, Guixing Zheng, Bingxia Chen, Mengxin Zhang, Jian Li, Tao Peng, Jun Huang, Xinhua Wang   +8 more
doaj   +1 more source

Combinatorics of RNA secondary structures

Discrete Applied Mathematics, 1998
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Ivo L. Hofacker, Peter Schuster 0002, Peter F. Stadler   +2 more
openaire   +2 more sources

Crystal structure of Schmallenberg orthobunyavirus nucleoprotein-RNA complex reveals a novel RNA sequestration mechanism [PDF]

, 2013
Schmallenberg virus (SBV) is a newly emerged orthobunyavirus (family Bunyaviridae) that has caused severe disease in the offspring of farm animals across Europe.
Richard M. Elliott, Böttcher, Bettina, Li, P., Dong, H., Li, Ping, Dong, Changjiang, Dong, Haohao, Elliott, R., Boettcher, Bettina, Elliott, Richard M., Bottcher, B., Haohao Dong, Bettina Böttcher, Ping Li, Elliott, Richard M, Dong, C., Changjiang Dong   +16 more
core   +1 more source

A New Method of RNA Secondary Structure Prediction Based on Convolutional Neural Network and Dynamic Programming

Frontiers in Genetics, 2019
In recent years, obtaining RNA secondary structure information has played an important role in RNA and gene function research. Although some RNA secondary structures can be gained experimentally, in most cases, efficient, and accurate computational ...
Hao Zhang, Chunhe Zhang, Zhi Li, Cong Li, Xu Wei, Borui Zhang, Yuanning Liu   +6 more
doaj   +1 more source

JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures. [PDF]

PLoS ONE, 2017
Many tools are available for visualizing RNA or DNA secondary structures, but there is scarce implementation in JavaScript that provides seamless integration with the increasingly popular web computational platforms. We have developed JNSViewer, a highly
Jieming Shi, Xi Li, Min Dong, Mitchell Graham, Nehul Yadav, Chun Liang   +5 more
doaj   +1 more source