Results 261 to 270 of about 11,591,695 (294)
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Prediction of super-secondary structure in proteins
Nature, 1983Various methods for the prediction of secondary structure from amino acid sequence can consistently achieve on average 60% accuracy when tested for several proteins. Improvement on this value has proved difficult, despite increasing the size of the data set and refining predictive techniques.
W R, Taylor, J M, Thornton
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Prediction of secondary structure
1996Abstract The prediction of protein secondary structure is a major part of the general protein folding problem and is the most general method of obtaining some structural information from any newly-determined sequence. Secondary structure prediction is useful in a wide variety of problems concerned with proteins.
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Computational Prediction of Secondary and Supersecondary Structures
2012The sequence-based prediction of the secondary and supersecondary structures enjoys strong interest and finds applications in numerous areas related to the characterization and prediction of protein structure and function. Substantial efforts in these areas over the last three decades resulted in the development of accurate predictors, which take ...
Ke, Chen, Lukasz, Kurgan
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Improving protein secondary structure predictions by prediction fusion
Information Fusion, 2009Protein secondary structure prediction is still a challenging problem at today. Even if a number of prediction methods have been presented in the literature, the various prediction tools that are available on-line produce results whose quality is not always fully satisfactory.
PALOPOLI, Luigi +4 more
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Secondary Structure Predictions for Rat Osteopontin
Connective Tissue Research, 1989Five computerized methods were used to predict the secondary structure of osteopontin - a bone-derived cell attachment protein. The amino terminal one-fifth and the carboxy terminal one-third of the 301 amino acid protein contain eight alpha helices (41% of the total residues).
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Secondary structure prediction of fish protamines
Biochimica et Biophysica Acta (BBA) - Protein Structure, 1980The secondary structures of thirteen fish protamines have been predicted by the statistical method of Chou and Fasman as well as by two modifications of it. The occurrence of phosphorylatable residues in predicted beta-turns is discussed. The results are compared with available spectroscopic observations.
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Prediction of Sequentially Optimal RNA Secondary Structures
Journal of Biomolecular Structure and Dynamics, 1997A rigorous mathematical modeling of the RNA sequential folding process during transcription is proposed. It is based, at each transcription step, on a homogeneous markovian jump process, the state space of which is the set of structures constructible on the part of the RNA already transcribed.
Breton, N., Jacob, C., Daegelen, P.
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SCFGs in RNA secondary structure prediction RNA secondary structure prediction: a hands-on approach.
Methods in molecular biology (Clifton, N.J.), 2014Stochastic context-free grammars (SCFGs) were first established in the context of natural language modelling, and only later found their applications in RNA secondary structure prediction. In this chapter, we discuss the basic SCFG algorithms (CYK and inside-outside algorithms) in an application-centered manner and use the pfold grammar as a case study
Zsuzsanna, Sükösd +2 more
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Prediction of the secondary and tertiary structure of plastocyanin
Biophysical Chemistry, 1976The amino acid sequences of nine plastocyanins were examined using four published methods for the prediction of secondary structure in proteins. The results of the four methods were combined in such a way as to maximize agreement, and the position of alpha helices, beta sheets, and beta turns in plastocyanin was predicted.
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Secondary structure prediction and protein design.
Biochemical Society symposium, 1990For non-homologous proteins, and after cross-validation, the methods reviewed in this article exhibit a probability index (percentage of correctly predicted residues per predicted residues) of 59-65.5% according to the methods employed with a standard deviation of 7% for three conformational states: alpha-helix, beta-strand and coil.
Garnier, Jean +3 more
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