Results 21 to 30 of about 259,819 (301)

Phenotypic Selection of Dairy Cattle Infected with Bovine Leukemia Virus Demonstrates Immunogenetic Resilience through NGS-Based Genotyping of BoLA MHC Class II Genes

Pathogens, 2022
Characterization of the bovine leukocyte antigen (BoLA) DRB3 gene has shown that specific alleles associate with susceptibility or resilience to the progression of bovine leukemia virus (BLV), measured by proviral load (PVL).
Chaelynne E. Lohr, Kelly R. B. Sporer, Kelsey A. Brigham, Laura A. Pavliscak, Matelyn M. Mason, Andrew Borgman, Vickie J. Ruggiero, Tasia M. Taxis, Paul C. Bartlett, Casey J. Droscha   +9 more
doaj   +1 more source

Use of whole-genus genome sequence data to develop a multilocus sequence typing tool that accurately identifies Yersinia isolates to the species and subspecies levels [PDF]

, 2015
The genus Yersinia is a large and diverse bacterial genus consisting of human-pathogenic species, a fish-pathogenic species, and a large number of environmental species.
Carniel, Elisabeth, Chattaway, Marie A., Connor, Thomas Richard, Hall, Miquette, Jenkins, Claire, Ledeboer, N. A., McNally, Alan, Rajakaruna, Lakshani, Rajendram, Dunstan, Reuter, Sandra, Savin, Cyril, Strauch, Eckhard, Thomson, Nicholas R., Van Damme, Inge   +13 more
core   +1 more source

In silico analyses of penicillin binding proteins in Burkholderia pseudomallei uncovers SNPs with utility for phylogeography, species differentiation, and sequence typing.

PLoS Neglected Tropical Diseases, 2022
Burkholderia pseudomallei causes melioidosis. Sequence typing this pathogen can reveal geographical origin and uncover epidemiological associations. Here, we describe B.
Heather P McLaughlin, Christopher A Gulvik, David Sue   +2 more
doaj   +1 more source

Human leukocyte antigen-A*24:02-B*40:247-C*03:04-DRB1*16:02, a deduced probable human leukocyte antigen haplotype associated with a low-incidence human leukocyte antigen allele B*40:247 in Taiwanese individuals: A case analysis

Tzu Chi Medical Journal, 2018
Objective: HLA-B*40:247 is a low incidence allele in the HLA-B locus. The aim of this study is to confirm the ethnicity of B*40:247 and its deduced probable HLA- associated haplotype in Taiwanese individuals.
Kuo-Liang Yang, Zheng-Zhong Zheng, Li-Yun Lin   +2 more
doaj   +1 more source

Diverse sequence types of Klebsiella pneumoniae contribute to the dissemination of bla NDM-1 in India, Sweden, and the United Kingdom [PDF]

, 2012
Clinical isolates of Klebsiella pneumoniae producing NDM-1 carbapenemase from India (n = 22), the United Kingdom (n = 13), and Sweden (n = 4) were subjected to multilocus sequence typing (MLST), automated repetitive sequence-based PCR (rep-PCR ...
Froding, Inga, Giske, Christian G., Hasan, Chowdhury, Livermore, David, Toleman, Mark, Turlej-Rogacka, Agata, Walsh, Timothy R., Woodford, Neil   +7 more
core   +2 more sources

Novel single nucleotide polymorphism-based assay for genotyping Mycobacterium avium subsp. paratuberculosis [PDF]

, 2016
Typing of Mycobacterium avium subspecies paratuberculosis strains presents a challenge, since they are genetically monomorphic and traditional molecular techniques have limited discriminatory power.
Bryant, Josephine, Goldstone, Robert J., Inácio, João, Leão, Célia, McLuckie, Joyce, Smith, David G.E., Stevenson, Karen   +6 more
core   +2 more sources

Evaluation of Polymorphic Locus Sequence Typing for Candida glabrata Epidemiology. [PDF]

, 2016
The opportunistic yeastCandida glabratais increasingly refractory to antifungal treatment or prophylaxis and relatedly is increasingly implicated in health care-associated infections.
Edlind, Tom, Healey, Kelley, Katiyar, Santosh, Shelton, Celeste, Shiffrin, MD, Eric, Vermitsky, John-Paul   +5 more
core   +2 more sources

Microbial DNA Typing by Automated Repetitive-Sequence-Based PCR [PDF]

Journal of Clinical Microbiology, 2005
ABSTRACT Repetitive sequence-based PCR (rep-PCR) has been recognized as an effective method for bacterial strain typing. Recently, rep-PCR has been commercially adapted to an automated format known as the DiversiLab system to provide a reliable PCR-based typing system for clinical laboratories. We describe the adaptations made to
Mimi, Healy, Joe, Huong, Traci, Bittner, Maricel, Lising, Stacie, Frye, Sabeen, Raza, Robert, Schrock, Janet, Manry, Alex, Renwick, Robert, Nieto, Charles, Woods, James, Versalovic, James R, Lupski   +12 more
openaire   +2 more sources

Development and evaluation of double locus sequence typing for molecular epidemiological investigations of Clostridium difficile. [PDF]

, 2015
Despite the development of novel typing methods based on whole genome sequencing, most laboratories still rely on classical molecular methods for outbreak investigation or surveillance.
Basset, P., Blanc, D.S., Greub, G., Magalhaes, B., Prod'hom, G., Senn, L., Stojanov, M., Terletsky, V.   +7 more
core   +1 more source

Development of an Online Genome Sequence Comparison Resource for Bacillus cereus sensu lato Strains Using the Efficient Composition Vector Method

Toxins, 2023
An automated method was developed for differentiating closely related B. cereus sensu lato (s.l.) species, especially biopesticide Bacillus thuringiensis, from other human pathogens, B. anthracis and B. cereus sensu stricto (s.s.).
Kui Wang, Changlong Shu, Alejandra Bravo, Mario Soberón, Hongjun Zhang, Neil Crickmore, Jie Zhang   +6 more
doaj   +1 more source