SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles [PDF]
BMC Bioinformatics, 2020 Background The human leukocyte antigen (HLA) gene family plays a key role in the immune response and thus is crucial in many biomedical and clinical settings.
Yong Zhang +14 more
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Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing. [PDF]
PLoS ONE, 2018 Inadequate discriminatory power to distinguish between L. pneumophila isolates, especially those belonging to disease-related prevalent sequence types (STs) such as ST1, ST36 and ST47, is an issue of SBT scheme.
Xiao-Yong Zhan, Qing-Yi Zhu
doaj +2 more sources
Antibiotics, 2021 The emerging spread of carbapenemase-producing Enterobacterales (CPE) strains, in particular, Klebsiella pneumoniae and Escherichia coli, has become a significant threat to hospitalized patients.
Pamela Barbadoro +13 more
doaj +1 more source
Nature Communications, 2022 Lab-based surveillance of Shigella has traditionally been based on serotyping but increasing availability of whole genome sequencing could enable higher resolution typing.
Iman Yassine +12 more
doaj +1 more source
Comprehensive Assessment of Subtyping Methods for Improved Surveillance of Foodborne Salmonella
Microbiology Spectrum, 2022 High-resolution and efficient typing for the bacterial pathogen is essential for tracking the sources, detecting or diagnosing variants, and conducting a risk assessment. However, a systematic in-field investigation of Salmonella along the food chain has
Hang Pan +13 more
doaj +1 more source
Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis [PDF]
, 2020 Background: Salmonellosis is one of the most common foodborne diseases worldwide. Although human infection by non-typhoidal Salmonella (NTS) enterica subspecies enterica is associated primarily with a self-limiting diarrhoeal illness, invasive bacterial ...
Mohammed, M. +3 more
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Journal of Global Antimicrobial Resistance, 2021 : Objectives: Vancomycin-resistant Enterococcus faecium (VRE) belonging to sequence type 80 (ST80) have been successfully disseminating in hospital settings.
Fredrik Dyrkell +2 more
doaj +1 more source
Multilocus sequence typing breathes life into a microbial metagenome. [PDF]
PLoS ONE, 2006 Shot-gun sequencing of DNA isolated from the environment and the assembly of metagenomes from the resulting data has considerably advanced the study of microbial diversity.
Eshwar Mahenthiralingam +6 more
doaj +1 more source
Characterization of Antibiotic and Biocide Resistance Genes and Virulence Factors of Staphylococcus Species Associated with Bovine Mastitis in Rwanda [PDF]
, 2020 The present study was conducted from July to August 2018 on milk samples taken at dairy farms in the Northern Province and Kigali District of Rwanda in order to identify Staphylococcus spp. associated with bovine intramammary infection.
Antók, Fruzsina Irén +16 more
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Comparison of methods for in-house screening of HLA*B57:01 to prevent abacavir hypersensitivity in HIV-1 care [PDF]
, 2015 Abacavir is a nucleoside reverse transcriptase inhibitor used as part of combination antiretroviral therapy in HIV-1-infected patients. Because this drug can cause a hypersensitivity reaction that is correlated with the presence of the HLA-B*57:01 ...
Bonczkowski, Pawel +18 more
core +13 more sources