Results 91 to 100 of about 628,105 (211)

BABAPPAlign: a multiple sequence alignment engine with a learned residue-level scoring function. [PDF]

Bioinformatics
Sinha K.
europepmc   +1 more source

In silico and in vitro exploration of a tyrosinase for biocatalytic production of catechols

FEBS Open Bio, EarlyView.
Tyrosinase from Ralstonia pseudosolanacearum is a promising biocatalyst for producing valuable catechols from monophenol substrates. This tyrosinase is uniquely suited to this due to its high monophenolase : diphenolase ratio. We combined in silico docking and in vivo kinetic characterisation of this tyrosinase with 11 industrially relevant monophenols,
James Britton, Fang Zhao, Reeta Davis, Meg Walsh, Kevin E O'Connor, David O'Connell, Tanja Narancic   +6 more
wiley   +1 more source

Ultrafast and accurate sequence alignment and clustering of viral genomes. [PDF]

Nat Methods
Zielezinski A, Gudyś A, Barylski J, Siminski K, Rozwalak P, Dutilh BE, Deorowicz S.   +6 more
europepmc   +2 more sources

Singletrack: an algorithm for improving memory consumption and performance of gap-affine sequence alignment. [PDF]

Bioinformatics
López-Villellas L, Iñiguez C, Jiménez-Blanco A, Aguado-Puig Q, Moretó M, Alastruey-Benedé J, Ibáñez P, Marco-Sola S.   +7 more
europepmc   +1 more source

Dual native G‐quadruplex folding is associated with chromatin looping at the MYC locus

FEBS Open Bio, EarlyView.
BG4‐detectable G‐quadruplex (G4) in HaCaT and NHEK keratinocytes identified folded and unfolded G4s enriched at promoters/TSSs and active enhancers, whereas unfolded G4s also overlapped weak/poised enhancers. At MYC–PVT1, 3C‐qPCR detected enhancer–promoter looping only when G4s were simultaneously folded at both regulatory elements under native ...
Dieila Giomo de Lima, Gustavo Narvaes Guimarães, Emilyane de Oliveira Santana Amaral, Bianca Caroline Figueiredo Bianco, Manuel Jara‐Espejo, Sérgio Roberto Peres Line, Ana Paula de Souza, Aline Cristiane Planello   +7 more
wiley   +1 more source

A reinforcement learning-enhanced fuzzy multi-objective equilibrium optimization framework for multiple sequence alignment. [PDF]

Sci Rep
Hosseini H, Mansouri N, Mohammad Hasani Zade B.   +2 more
europepmc   +1 more source

Heterotropic regulation and negative homotropic cooperativity

FEBS Open Bio, EarlyView.
We identified a structural module common to some proteins that couple negative cooperativity with heterotropic regulation, two features that rarely coexist. These proteins are ring‐like and present an ordered asymmetry whereby noncontacting subunits are symmetric, and their tertiary structure differs from that of contacting subunits.
Veronica Morea, Francesco Angelucci, Federica Arnesano, Gianmarco Pascarella, Patrizio Di Micco, Andrea Bellelli   +5 more
wiley   +1 more source

RAM-MSA: an anytime memory-bounded method for exact multiple sequence alignment using path finding. [PDF]

Bioinform Adv
Wang J, Ino F.
europepmc   +1 more source

From patient advocacy to patient‐driven research: Building active partnerships beginning at the bench to reach the bedside

FEBS Open Bio, EarlyView.
Research is strongest when conducted alongside patients, not just about them. Patient research organizations help integrate patient perspectives into research priorities, study design, and scientific meetings, leading to meaningful patient outcomes and development of relevant therapies.
Jenica H. Kakadia, Rachel Heilmann, Maximiliano Barrientos, Laura MacNeill, Ingrid Vallee, Sarah K. Schultz, Patrick O'Donoghue, Angelica A. Moresco, Victoria M. Siu, Ilka U. Heinemann   +9 more
wiley   +1 more source

Extending Biopython to combine multiple sequence alignments with the same reference into a Multiple Sequence Alignment. [PDF]

MicroPubl Biol
Bastress C, de Hoon M, Lera-Ramirez M, Bähler J.   +3 more
europepmc   +1 more source