Results 241 to 250 of about 4,504,319 (408)

SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments [PDF]

, 2001
Thomas Wiehe, Steffi Gebauer-Jung, Thomas Mitchell‐Olds, Roderic Guigó   +3 more
openalex   +1 more source

Enhanced discovery of bacterial laccase‐like multicopper oxidase through computer simulation and metagenomic analysis of industrial wastewater

FEBS Open Bio, EarlyView.
We obtained potential bacterial laccase‐like multicopper oxidase (LMCO) sequences through metagenomic sequencing. All sequences exhibited significant differences from known LMCOs in databases. To select the most promising candidates, we performed structure prediction and molecular docking using alphafold2, metal3d and rosetta.
Ting Cui, Ariel Kushmaro, Hana Barak, Anja Poehlein, Rolf Daniel, Hans‐Jürgen Mägert   +5 more
wiley   +1 more source

A new approach to sequence comparison: normalized sequence alignment [PDF]

, 2001
Abdullah N. Arslan, Ömer Eğeci̇oğlu, Pavel A. Pevzner   +2 more
openalex   +1 more source

Comparative study of adenosine 3′‐pyrophosphokinase domains of MuF polymorphic toxins

FEBS Open Bio, EarlyView.
With the ultimate goal of understanding the association of toxin‐immunity modules to temperate phages, we characterized toxins from three prophages and examined cross‐protection from immunity proteins. The toxins exhibit adenosine 3′‐pyrophosphokinase activity and are toxic in Escherichia coli.
Eloïse M. Paulet, Julia Bartoli, Atakan Kabtan, Chloé M. Piras, Audrey C. Tempier, Eric Cascales, Julie P. Viala   +6 more
wiley   +1 more source

AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative visualization of big data. [PDF]

PLoS One, 2023
Alsamman AM, El Allali A, Mokhtar MM, Al-Sham'aa K, Nassar AE, Mousa KH, Kehel Z.   +6 more
europepmc   +1 more source

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families [PDF]

, 2001
Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, Jiye Shi, Hiroki Shirai, Tom L. Blundell   +7 more
openalex   +1 more source

KCS1 and VIP1, the genes encoding yeast phosphoinositol pyrophosphate synthases, are required for Ca2+‐mediated response to dimethylsulfoxide (DMSO)

FEBS Open Bio, EarlyView.
Ca2+‐mediated response to DMSO was investigated in Saccharomyces cerevisiae cells expressing Ca2+‐dependent aequorin. Cell exposure to DMSO induced a cytosolic Ca2+ wave dependent on the integrity of the Cch1/Mid1 channel. Deletion of KCS1 or VIP1 genes encoding the phosphoinositol pyrophosphate (PP‐IP) synthases suppressed the DMSO‐induced Ca2 ...
Larisa Ioana Gogianu, Lavinia Liliana Ruta, Claudia Valentina Popa, Simona Ghenea, Ileana Cornelia Farcasanu   +4 more
wiley   +1 more source

QuickEd: high-performance exact sequence alignment based on bound-and-align. [PDF]

Bioinformatics
Doblas M, Lostes-Cazorla O, Aguado-Puig Q, Iñiguez C, Moreto M, Marco-Sola S.   +5 more
europepmc   +1 more source

Abalign: a comprehensive multiple sequence alignment platform for B-cell receptor immune repertoires. [PDF]

Nucleic Acids Res, 2023
Zong F, Long C, Hu W, Chen S, Dai W, Xiao ZX, Cao Y.   +6 more
europepmc   +1 more source

HIV-1 and HIV-2 LTR Nucleotide Sequences: Assessment of the Alignment by N-block Presentation, “Retroviral Signatures” of Overrepeated Oligonucleotides, and a Probable Important Role of Scrambled Stepwise Duplications/Deletions in Molecular Evolution [PDF]

, 2001
Ivan Laprevotte, Maude Pupin, E Coward, Gilles Didier, Christophe Terzian, Claudine Devauchelle, Alain Hénaut   +6 more
openalex   +1 more source