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Sequence Handling by Sequence Analysis Toolbox v1.0
2006The fact that mass spectrometry have become a high-throughput method calls for bioinformatic tools for automated sequence handling and prediction. For efficient use of bioinformatic tools, it is important that these tools are integrated or interfaced with each other.
Ingrell, Christian Ravnsborg +2 more
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2005
In mass spectrometry (MS)-based protein studies, peptide fragmentation analysis (i.e., MS/MS experiments such as matrix-assisted laser desorption ionization [MALDI]-post-source decay [PSD] analysis, collision-induced dissociation [CID] of electrospray- and MALDI-generated ions, and electron-capture and electron-transfer dissociation analysis of ...
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In mass spectrometry (MS)-based protein studies, peptide fragmentation analysis (i.e., MS/MS experiments such as matrix-assisted laser desorption ionization [MALDI]-post-source decay [PSD] analysis, collision-induced dissociation [CID] of electrospray- and MALDI-generated ions, and electron-capture and electron-transfer dissociation analysis of ...
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Computer Analysis of Sequence Data
1994GCG: Fragment Assembly Programs. GCG: Drawing Linear Restriction Maps. GCG: Drawing Circular Restriction Maps. GCG: Displaying Restriction Sites and Possible Translations in a DNA Sequence. GCG: Assembly of Sequences into New Sequence Constructs. GCG: Comparison of Sequences. GCG: Production of Multiple-Sequence Alignment. GCG: Database Searching. GCG:
Annette Griffin, Hugh G. Griffin
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Nucleotide sequence analysis of DNA
Biochemical and Biophysical Research Communications, 1972Abstract A radioactive octanucleotide d(C-T-T-T-C-C-C-C) complementary to one of the cohesive ends of bacteriophage 186 DNA has been isolated. The octanucleotide was used as a model oligonucleotide for binding studies with the single-strand ends of 186 DNA.
Raji Padmanabhan, Ray Wu, R. Padmanabhan
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COMPUTATIONAL ANALYSIS OF GENETIC SEQUENCES
Annual Review of Biophysics and Biophysical Chemistry, 1986Much computational processing of sequence data can be accomplished by applying the kinds of computational tools and processes widely used in text processing, perhaps specialized to sequences, but not necessarily so. A number of programs have been developed specifically to assist in assembling sequences from individually sequenced restriction fragments.
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Phylogenetic Analysis of Adenovirus Sequences
2007Members of the family Adenoviridae have been isolated from a large variety of hosts, including representatives from every major vertebrate class from fish to mammals. The high prevalence, together with the fairly conserved organization of the central part of their genomes, make the adenoviruses one of (if not the) best models for studying viral ...
Balázs Harrach, Mária Benko
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2006
The three-dimensional geometry of a structure can be determined from the bedding attitudes measured in a single well bore or on a traverse through a structure. The method of dip sequence analysis presented here was developed for the structural analysis of dipmeter logs by Bengtson (1981a) but is equally informative whether the traverse is down a well ...
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The three-dimensional geometry of a structure can be determined from the bedding attitudes measured in a single well bore or on a traverse through a structure. The method of dip sequence analysis presented here was developed for the structural analysis of dipmeter logs by Bengtson (1981a) but is equally informative whether the traverse is down a well ...
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2003
The strength of the Wisconsin Package (GCG) is that it contains a suite of programs that serve a wide range of sequence analysis needs. A selected number of these programs are described. Each GCG program has extensive modifiers or parameters available. Top-level online help contains a list of all programs and appendices in alphabetical order.
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The strength of the Wisconsin Package (GCG) is that it contains a suite of programs that serve a wide range of sequence analysis needs. A selected number of these programs are described. Each GCG program has extensive modifiers or parameters available. Top-level online help contains a list of all programs and appendices in alphabetical order.
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Sequence as Network: An Attempt to Apply Network Analysis to Sequence Analysis
2014What happens if we decide to plot sequences as graphs? Can this approach increase our knowledge of the underlying structure common to the single sequences? Moreover, will this approach bring to the surface the structures, patterns, and careers still (perhaps) hidden to our eyes and knowledge?
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