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The EMBL-EBI search and sequence analysis tools APIs in 2019
Nucleic Acids Research, 2019 The EMBL-EBI provides free access to popular bioinformatics sequence analysis applications as well as to a full-featured text search engine with powerful cross-referencing and data retrieval capabilities.
Fabio Madeira +2 more
exaly +2 more sources
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Nature Biotechnology, 2017 VOLUME 35 NUMBER 11 NOVEMBER 2017 NATURE BIOTECHNOLOGY performance was to combine the doublematch criterion with making k-mers as long as possible, which required finding similar and not just exact k-mers. This effectively bases our decision on up to 2 ×
Martin Steinegger, Johannes Söding
exaly +2 more sources
Quantitative Methods in the Humanities, 2019 Andrey D Prjibelski +2 more
semanticscholar +3 more sources
Search and sequence analysis tools services from EMBL-EBI in 2022
Nucleic Acids Res., 2022 The EMBL-EBI search and sequence analysis tools frameworks provide integrated access to EMBL-EBI’s data resources and core bioinformatics analytical tools.
F. Madeira +8 more
semanticscholar +1 more source
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis [PDF]
Micro, 2020 Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution.
Damla Senol Cali +15 more
semanticscholar +1 more source
Crime Script Sequencing: An optimal forensic combination for cold case analysis
Forensic Science International: Synergy, 2022 Criminal cases go cold when investigative leads or forensic testing does not lead to a successful arrest. In these cases, investigators are often keen to use novel methods to derive fresh ideas or insights.
D.A. Keatley, M. Arntfield, D.D. Clarke
doaj +1 more source
Representation learning applications in biological sequence analysis
bioRxiv, 2021 Remarkable advances in high-throughput sequencing have resulted in rapid data accumulation, and analyzing biological (DNA/RNA/protein) sequences to discover new insights in biology has become more critical and challenging.
Hitoshi Iuchi +8 more
semanticscholar +1 more source
RNA Sequencing and Analysis [PDF]
Cold Spring Harbor Protocols, 2015 RNA sequencing (RNA-Seq) uses the capabilities of high-throughput sequencing methods to provide insight into the transcriptome of a cell. Compared to previous Sanger sequencing- and microarray-based methods, RNA-Seq provides far higher coverage and greater resolution of the dynamic nature of the transcriptome.
Kimberly R. Kukurba +1 more
openaire +3 more sources
Cross-Border Transmissions of the Delta Substrain AY.29 During Tokyo Olympic and Paralympic Games
Frontiers in Microbiology, 2022 Tokyo Olympic and Paralympic Games, postponed for the COVID-19 pandemic, were finally held in the summer of 2021. Just before the games, the Alpha variant was being replaced with the more contagious Delta variant.
Takahiko Koyama +6 more
doaj +1 more source