Results 11 to 20 of about 25,904,502 (202)

Bayesian prediction of microbial oxygen requirement [v1; ref status: indexed, http://f1000r.es/1m6]

open access: yesF1000Research, 2013
Background: Prediction of the optimal habitat conditions for a given bacterium, based on genome sequence alone would be of value for scientific as well as industrial purposes. One example of such a habitat adaptation is the requirement for oxygen.
Dan B. Jensen, David W. Ussery
doaj   +1 more source

Signal Processing Methods for Genomic Sequence Analysis [PDF]

open access: yes, 2007
Signal processing is the art of representing, transforming, analyzing, and manipulating signals. It deals with a wide range of signals, from speech and audio signals to images and video signals, and many others.
Yoon, Byung-Jun
core   +1 more source

Quantification of within-sample genetic heterogeneity from SNP-array data

open access: yesScientific Reports, 2017
Intra-tumour genetic heterogeneity (ITH) fosters drug resistance and is a critical hurdle to clinical treatment. ITH can be well-measured using multi-region sampling but this is costly and challenging to implement.
Pierre Martinez   +5 more
doaj   +1 more source

A domain sequence approach to pangenomics: applications to Escherichia coli [v2; ref status: indexed, http://f1000r.es/ul]

open access: yesF1000Research, 2013
The study of microbial pangenomes relies on the computation of gene families, i.e. the clustering of coding sequences into groups of essentially similar genes. There is no standard approach to obtain such gene families.
Lars-Gustav Snipen, David W Ussery
doaj   +1 more source

Whole-genome sequence-based analysis of thyroid function. [PDF]

open access: yes, 2015
Normal thyroid function is essential for health, but its genetic architecture remains poorly understood. Here, for the heritable thyroid traits thyrotropin (TSH) and free thyroxine (FT4), we analyse whole-genome sequence data from the UK10K project (N=2 ...
Paternoster, Lavinia   +635 more
core   +1 more source

A domain sequence approach to pangenomics: applications to Escherichia coli [v1; ref status: indexed, http://f1000r.es/QSnDE6]

open access: yesF1000Research, 2012
The study of microbial pangenomes relies on the computation of gene families, i.e. the clustering of coding sequences into groups of essentially similar genes. There is no standard approach to obtain such gene families.
Lars-Gustav Snipen, David W Ussery
doaj   +1 more source

Analyzing integrated network of methylation and gene expression profiles in lung squamous cell carcinoma

open access: yesScientific Reports, 2022
Gene expression, DNA methylation, and their organizational relationships are commonly altered in lung squamous cell carcinoma (LUSC). To elucidate these complex interactions, we reconstructed a differentially expressed gene network and a differentially ...
Yusri Dwi Heryanto   +2 more
doaj   +1 more source

SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data

open access: yesmSphere, 2018
Typing of methicillin-resistant Staphylococcus aureus (MRSA) is important in infection control and surveillance. The current nomenclature of MRSA includes the genetic background of the S.
Hülya Kaya   +9 more
doaj   +1 more source

Analysis and design of sequencing rules for car sequencing [PDF]

open access: yesEuropean Journal of Operational Research, 2010
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Uli Golle, Nils Boysen, Franz Rothlauf
openaire   +2 more sources

Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells

open access: yesStem Cell Research, 2014
The shortage of molecular information on cell cycle changes along embryonic stem cell (ESC) differentiation prompts an in silico approach, which may provide a novel way to identify candidate genes or mechanisms acting in coordinating the two programs. We
Angela Re   +4 more
doaj   +1 more source

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