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Bioinformatics for DNA Sequence Analysis

open access: yesSelection of models of DNA evolution with jModelTest, 2009
The storage, processing, description, transmission, connection, and analysis of the waves of new genomic data have made bioinformatics skills essential for scientists working with DNA sequences. In Bioinformatics for DNA Sequence Analysis, experts in the field provide practical guidance and troubleshooting advice for the computational analysis of DNA ...
D. Posada
semanticscholar   +4 more sources

Early-onset ischaemic stroke in a patient with the novel F2 c.1824C>T gene variant and PAI-1 4G/4G, MTHFR 677TT genotype [PDF]

open access: yesVojnosanitetski Pregled, 2022
Introduction. Ischemic stroke (IS) is a heterogeneous dis-order caused by several genetic and environmental risk factors. It was suggested that coagulation disorders cause 1-4% of cases with IS, especially in patients with early onset of IS. Case report.
Pruner Iva   +5 more
doaj   +1 more source

Analysis of DNA Sequence Classification Using CNN and Hybrid Models

open access: yesComput. Math. Methods Medicine, 2021
In a general computational context for biomedical data analysis, DNA sequence classification is a crucial challenge. Several machine learning techniques have used to complete this task in recent years successfully.
Hemalatha Gunasekaran   +7 more
semanticscholar   +1 more source

Sequencing analysis of HPV-other type on an HPV DNA chip [PDF]

open access: yesObstetrics & Gynecology Science, 2018
ObjectivesTo identify the specific human papillomavirus (HPV) genotypes from HPV-other type on an HPV DNA chip test by sequencing.MethodsAmong 13,600 women undergoing a routine gynecology examination including Pap smear and/or HPV test by DNA chip test ...
Min-Jeong Kim, Jin Ju Kim, Sunmie Kim
doaj   +1 more source

Variants of CARD14 gene and psoriasis vulgaris in southern Chinese cohort [PDF]

open access: yesAnais Brasileiros de Dermatologia, 2016
BACKGROUND: Recent mutation analysis identified several missense mutations in CARD14 in psoriasis. OBJECTIVES: We performed the genomic sequence analysis on CARD14 in southern Chinese Han Cantonese with Psoriasis Vulgaris (PsV) to reveal more causative ...
Kunju Zhu   +4 more
doaj   +1 more source

Clonal leukemic evolution in myelodysplastic syndromes with TET2 and IDH1/2 mutations

open access: yesHaematologica, 2014
Somatic mutations of TET2, IDH1, and IDH2 have been described in myelodysplastic syndrome. The impact of these mutations on outcome of myelodysplastic syndrome and their progression to secondary acute myeloid leukemia remains unclear.
Tung-Liang Lin   +18 more
doaj   +1 more source

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.

open access: yesMolecular biology and evolution, 2017
We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version of the popular tool for performing exhaustive population genetic analyses on multiple sequence alignments.
J. Rozas   +6 more
semanticscholar   +1 more source

Comparative Viral Metagenomics of Environmental Samples from Korea [PDF]

open access: yesGenomics & Informatics, 2013
The introduction of metagenomics into the field of virology has facilitated the exploration of viral communities in various natural habitats. Understanding the viral ecology of a variety of sample types throughout the biosphere is important per se, but ...
Min-Soo Kim, Tae Woong Whon, Jin-Woo Bae
doaj   +1 more source

Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA.

open access: yesThe Plant Journal, 1994
A large number of morphologically normal, fertile, transgenic rice plants were obtained by co-cultivation of rice tissues with Agrobacterium tumefaciens.
Yukoh Hiei   +3 more
semanticscholar   +1 more source

Comparative analyses of classical phenotypic method and ribosomal RNA gene sequencing for identification of medically relevant Candida species

open access: yesMemorias do Instituto Oswaldo Cruz, 2013
As the distribution of Candida species and their susceptibility to antifungal agents have changed, a new means of accurately and rapidly identifying these species is necessary for the successful early resolution of infection and the subsequent reduction ...
Constanza Giselle Taverna   +6 more
doaj   +1 more source

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