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Computer analysis of DNA and protein sequences
European Journal of Biochemistry, 1991Some recent trends in the development of theoretical methods for DNA and protein sequence analysis are reviewed, with particular emphasis on the design of new databases, motif searches, sequence alignment algorithms and applications of neural networks.
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Analysis of repeating DNA sequences by reassociation.
Methods in enzymology, 1974Repetitive DNA occurs widely, if not universally, among higher organisms. A variety of procedures has been developed or adapted to examine its characteristics and a body of concepts and language has grown up to deal with its complexities. This chapter attempts to summarize this body of knowledge and technique.
Britten, Roy J. +2 more
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Prediction of Function in DNA Sequence Analysis
Journal of Computational Biology, 1995Recognition of function of newly sequenced DNA fragments is an important area of computational molecular biology. Here we present an extensive review of methods for prediction of functional sites, tRNA, and protein-coding genes and discuss possible further directions of research in this area.
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Analysis of Variation in Chloroplast DNA Sequences
2013This chapter introduces and reviews methods for analyzing variation in chloroplast DNA, mainly by polymerase chain reaction (PCR) and subsequent revelation of polymorphisms. Sources for chloroplast primers are discussed, as well as methods such as Sanger sequencing, PCR followed by restriction fragment length polymorphism (RFLP), gel electrophoresis ...
Berthold, Heinze +2 more
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Incremental DNA Sequence Analysis in the Cloud
2012In this paper, we propose to demonstrate a "stream-as-you-go" approach that minimizes the data transfer time of data- and compute-intensive scientific applications deployed in the cloud, by making them incrementally processable. We describe a system that implements this approach based on the IBM InfoSphere Streams computing platform deployed over ...
Romeo Kienzler +3 more
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Circulating tumor DNA in advanced solid tumors: Clinical relevance and future directions
Ca-A Cancer Journal for Clinicians, 2021Heather Parsons +2 more
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Cancer epigenetics in clinical practice
Ca-A Cancer Journal for Clinicians, 2023Veronica Davalos, Manel Esteller
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Instruction of epigenetic states from DNA sequences
Nature Reviews Molecular Cell Biology, 2023Yonatan Stelzer
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Machine Learning-Guided Systematic Search of DNA Sequences for Sorting Carbon Nanotubes
ACS Nano, 2022Zhiwei Lin, Anand Jagota, Yoona Yang
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