Results 21 to 30 of about 3,888,779 (212)

A protein structural study based on the centrality analysis of protein sequence feature networks.

PLoS ONE, 2021
In this paper, we use network approaches to analyze the relations between protein sequence features for the top hierarchical classes of CATH and SCOP. We use fundamental connectivity measures such as correlation (CR), normalized mutual information rate ...
Xiaogeng Wan, Xinying Tan
doaj   +1 more source

Analysis of protein sequences [PDF]

Genome Biology, 2000
Several programs to predict sequence and structural features of a protein can be run simultaneously on the PredictProtein server.
openaire   +2 more sources

SeqCP: A sequence-based algorithm for searching circularly permuted proteins

Computational and Structural Biotechnology Journal, 2023
Circular permutation (CP) is a protein sequence rearrangement in which the amino- and carboxyl-termini of a protein can be created in different positions along the imaginary circularized sequence.
Chi-Chun Chen, Yu-Wei Huang, Hsuan-Cheng Huang, Wei-Cheng Lo, Ping-Chiang Lyu   +4 more
doaj   +1 more source

Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement).

DNA Research, 1996
The sequence determination of the entire genome of the Synechocystis sp. strain PCC6803 was completed. The total length of the genome finally confirmed was 3,573,470 bp, including the previously reported sequence of 1,003,450 bp from map position 64% to ...
T. Kaneko, Shusei Sato, H. Kotani, Ayako Tanaka, E. Asamizu, Yasukazu Nakamura, N. Miyajima, M. Hirosawa, M. Sugiura, S. Sasamoto, Takaharu Kimura, T. Hosouchi, A. Matsuno, A. Muraki, N. Nakazaki, K. Naruo, Satomi Okumura, Sayaka Shimpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, Miho Yasuda, S. Tabata   +23 more
semanticscholar   +1 more source

The Cytoplasmic N,n'-Diacetylchitobiase Gene From Vibrio Parahaemolyticus: Sequence Analysis, Protein Secretion, and Secretion System Development.

, 1996
The nucleotide sequence of the gene encoding the cytoplasmic N ,N '-d iacetylchitobiase from Vibrio parahaem olyticus has been determ ined. The deduced peptide sequence surprisingly has m inim um evolutionary relationship to two other reported iV,iV ...
Michael H. Wu
semanticscholar   +1 more source

Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

DNA Research, 1996
The sequence determination of the entire genome of the Synechocystis sp. strain PCC6803 was completed. The total length of the genome finally confirmed was 3,573,470 bp, including the previously reported sequence of 1,003,450 bp from map position 64% to ...
Takakazu, Kaneko, Shusei, Sato, Hirokazu, Kotani, Ayako, Tanaka, Erika, Asamizu, Yasukazu, Nakamura, Nobuyuki, Miyajima, Makoto, Hirosawa, Masahiro, Sugiura, Shigemi, Sasamoto, Takaharu, Kimura, T. Hosouchi, Ai, Matsuno, Akiko, Muraki, Naomi, Nakazaki, Kaoru, Naruo, Satomi, Okumura, Sayaka, Shimpo, Chie, Takeuchi, Tsuyuko, Wada, Watanabe, Manabu, Yamada, Miho, Yasuda, Satoshi, Tabata   +45 more
semanticscholar   +1 more source

iSeqSearch: incremental protein search for iBlast/iMMSeqs2/iDiamond [PDF]

PeerJ
Background The advancement of sequencing technology has led to a rapid increase in the amount of DNA and protein sequence data; consequently, the size of genomic and proteomic databases is constantly growing.
Hyunwoo Yoo, Mohammadsaleh Refahi, Robi Polikar, Bahrad A. Sokhansanj, James R. Brown, Gail L. Rosen   +5 more
doaj   +2 more sources

Progressive search in tandem mass spectrometry

BMC Bioinformatics, 2023
Background High-throughput Proteomics has been accelerated by (tandem) mass spectrometry. However, the slow speed of mass spectra analysis prevents the analysis results from being up-to-date.
Yoonsung Joh, Kangbae Lee, Hyunwoo Kim, Heejin Park   +3 more
doaj   +1 more source

Species-specific analysis of protein sequence motifs using mutual information

BMC Bioinformatics, 2005
Background Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles derived from multiple sequence alignments provide an alternative description ...
Weckwerth Wolfram, Keshvari Nima, Hummel Jan, Selbig Joachim   +3 more
doaj   +1 more source

Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events

Frontiers in Bioinformatics, 2023
Protein annotation errors can have significant consequences in a wide range of fields, ranging from protein structure and function prediction to biomedical research, drug discovery, and biotechnology.
Arnaud Kress, Olivier Poch, Odile Lecompte, Julie D. Thompson   +3 more
doaj   +1 more source