Results 221 to 230 of about 1,187,055 (266)

Nanopore RNA Sequencing Analysis

2021
The recent advent of Nanopore sequencing allows for the sequencing of full-length RNA or cDNA molecules. This new type of data introduces new challenges from the computational point of view, and requires new software as well as dedicated analysis pipelines.
Tommaso, Leonardi, Adrien, Leger
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RNA Sequencing Analysis of Saliva exRNA

2022
Next-generation sequencing (NGS) methodologies are rapidly developing. However, RNA Sequencing of saliva is challenging due to low abundance and integrity of extracellular RNA, as well as large amounts of bacterial RNAs that may be encountered in saliva. In addition, the literature about human salivary extracellular RNA is very scarce.
Karolina Elżbieta, Kaczor-Urbanowicz, David T W, Wong   +1 more
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Identification and Analysis of Palindromes for RNA Sequences

2016 IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE), 2016
A palindrome is a string of the form S = A1 A2 or S = A1 aA2, where A1 and A2 are substrings of S and the reverse of A2 exactly matches with A1. DNA palindromes show direct influence on tumerogenesis due to the formation of DNA palindromes at microRNA genes, which involve in tumor development. Furthermore, RNA palindromes play a crucial role in genomic
Chien-Hung Huang, Sheng-Jia Weng, Praveen Kumar Korla, Jywe-Fei Fang, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng   +6 more
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Alternative expression analysis by RNA sequencing

Nature Methods, 2010
In alternative expression analysis by sequencing (ALEXA-seq), we developed a method to analyze massively parallel RNA sequence data to catalog transcripts and assess differential and alternative expression of known and predicted mRNA isoforms in cells and tissues.
Malachi, Griffith, Obi L, Griffith, Jill, Mwenifumbo, Rodrigo, Goya, A Sorana, Morrissy, Ryan D, Morin, Richard, Corbett, Michelle J, Tang, Ying-Chen, Hou, Trevor J, Pugh, Gordon, Robertson, Suganthi, Chittaranjan, Adrian, Ally, Jennifer K, Asano, Susanna Y, Chan, Haiyan I, Li, Helen, McDonald, Kevin, Teague, Yongjun, Zhao, Thomas, Zeng, Allen, Delaney, Martin, Hirst, Gregg B, Morin, Steven J M, Jones, Isabella T, Tai, Marco A, Marra   +25 more
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RNA SEQUENCE ANALYSIS

Annual Review of Biochemistry, 1970
FRACTIONATION AND PURIFICATION OF RNA 228 Transfer RNA 228 Ribosomal RNA ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. 230 Viral RNA 230 SEPARATION AND ISOLATION OF POLYNUCLEOTIDES 231 Physical methods . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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RNA sequencing and Prediction Tools for Circular RNAs Analysis

2018
Circular RNAs (circRNAs) are noncoding and single-stranded RNA transcripts able to form covalently circular-closed structures. They are generated through alternative splicing events and widely expressed from human to viruses. CircRNAs have been appointed as potential regulators of microRNAs (miRNAs), RNA-binding proteins (RPBs), and lineal protein ...
Elena, López-Jiménez, Ana M, Rojas, Eduardo, Andrés-León   +2 more
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In Silico Analysis of Micro-RNA Sequencing Data

2021
High-throughput sequencing for micro-RNAs (miRNAs) to obtain expression estimates is a central method of molecular biology. Surprisingly, there are a number of different approaches to converting sequencing output into micro-RNA counts. Each has their own strengths and biases that impact on the final data that can be obtained from a sequencing run. This
Ernesto, Aparicio-Puerta, Bastian, Fromm, Michael, Hackenberg, Marc K, Halushka   +3 more
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Sequence and Structure Analysis of Noncoding RNAs

2009
Noncoding RNAs (ncRNAs) are increasingly recognized as important functional molecules in the cell. Here we give a short overview of fundamental computational techniques to analyze ncRNAs that can help us better understand their function. Topics covered include prediction of secondary structure from the primary sequence, prediction of consensus ...
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Massively Parallel Analysis of Regulatory RNA Sequences

2021
The stability of RNA transcripts is regulated by signals within their sequences, but the identity of those signals still remain elusive in many biological systems. Recently introduced massively parallel tools for the analysis of regulatory RNA sequences provide the ability to detect functional cis-regulatory sequences of post-transcriptional RNA ...
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Bioinformatic Analysis of Small RNA Sequencing Libraries

2019
Bioinformatic analysis of small RNA sequencing libraries consists of transforming a series of small RNA sequencing experiment fastq files into a table containing small RNA sequences and their abundance. This is achieved by cleaning the reads, aligning the cleaned reads to a reference, and parsing the alignment results.
Ricardo A, Chávez Montes, Fabiola, Jaimes-Miranda, Stefan, de Folter   +2 more
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