Results 31 to 40 of about 31,098,092 (376)
Bayesian prediction of microbial oxygen requirement [v1; ref status: indexed, http://f1000r.es/1m6]
F1000Research, 2013 Background: Prediction of the optimal habitat conditions for a given bacterium, based on genome sequence alone would be of value for scientific as well as industrial purposes. One example of such a habitat adaptation is the requirement for oxygen.
Dan B. Jensen, David W. Ussery
doaj +1 more source
Generation and analysis of expressed sequence tags from Botrytis cinerea [PDF]
, 2006 http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0716-97602006000200018&lng=es&nrm=isoBotrytis cinerea is a filamentous plant pathogen of a wide range of plant species, and its infection may cause enormous damage both during plant growth and in ...
Holmes, David +4 more
core +2 more sources
Alignment-Free Sequence Analysis and Applications. [PDF]
Annual Review of Biomedical Data Science, 2018 Genome and metagenome comparisons based on large amounts of next generation sequencing (NGS) data pose significant challenges for alignment-based approaches due to the huge data size and the relatively short length of the reads. Alignment-free approaches
Jie Ren +6 more
semanticscholar +1 more source
Quantification of within-sample genetic heterogeneity from SNP-array data
Scientific Reports, 2017 Intra-tumour genetic heterogeneity (ITH) fosters drug resistance and is a critical hurdle to clinical treatment. ITH can be well-measured using multi-region sampling but this is costly and challenging to implement.
Pierre Martinez +5 more
doaj +1 more source
F1000Research, 2013 The study of microbial pangenomes relies on the computation of gene families, i.e. the clustering of coding sequences into groups of essentially similar genes. There is no standard approach to obtain such gene families.
Lars-Gustav Snipen, David W Ussery
doaj +1 more source
Quantitative Methods in the Humanities, 2019 Andrey D Prjibelski +2 more
semanticscholar +3 more sources
F1000Research, 2012 The study of microbial pangenomes relies on the computation of gene families, i.e. the clustering of coding sequences into groups of essentially similar genes. There is no standard approach to obtain such gene families.
Lars-Gustav Snipen, David W Ussery
doaj +1 more source
Scientific Reports, 2022 Gene expression, DNA methylation, and their organizational relationships are commonly altered in lung squamous cell carcinoma (LUSC). To elucidate these complex interactions, we reconstructed a differentially expressed gene network and a differentially ...
Yusri Dwi Heryanto +2 more
doaj +1 more source
W(h)ither Fossils? Studying Morphological Character Evolution in the Age of Molecular Sequences [PDF]
, 2008 A major challenge in the post-genomics era will be to integrate molecular sequence data from extant organisms with morphological data from fossil and extant taxa into a single, coherent picture of phylogenetic relationships; only then will these ...
Bull J. J. +21 more
core +2 more sources
Formal inverses of the generalized Thue-Morse sequences and variations of the Rudin-Shapiro sequence [PDF]
, 2020 A formal inverse of a given automatic sequence (the sequence of coefficients of the composition inverse of its associated formal power series) is also automatic.
Merta, Łukasz
core +2 more sources