CoLiDe: Combinatorial Library Design tool for probing protein sequence space. [PDF]
Bioinformatics, 2021 Tretyachenko V +4 more
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Ancestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation. [PDF]
J R Soc Interface, 2021 Buchholz PCF +4 more
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In Silico Identification of Potential Sites for a Plastic-Degrading Enzyme by a Reverse Screening through the Protein Sequence Space and Molecular Dynamics Simulations. [PDF]
Molecules, 2022 Charupanit K +3 more
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Navigating the amino acid sequence space between functional proteins using a deep learning framework. [PDF]
PeerJ Comput Sci, 2021 Bitard-Feildel T.
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Functions preserving sequence spaces
, 1999 The central theme of this paper is the transformation of classical sequence spaces by means of real functions. More precisely, let \(A\) and \(B\) be sets of real sequences. We denote by \(F(A,B)\) the set of functions \(f: \mathbb R\to \mathbb R\) such that for every sequence \(\{a_n\}\in A\) is \(\{f(a_n)\}\in B\).
openaire +3 more sources
How Binding Affinity and Binding Specificity Map to Sequence Space. [PDF]
J Mol EvolLiberles DA, Meyer MM.
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Field-theoretic density estimation for biological sequence space with applications to 5' splice site diversity and aneuploidy in cancer. [PDF]
Proc Natl Acad Sci U S A, 2021 Chen WC +4 more
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Descent from a common ancestor restricts exploration of protein sequence space. [PDF]
Proc Natl Acad Sci U S AIsakova LH +4 more
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