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Peer Review Report For: Lessons learned: overcoming common challenges in reconstructing the SARS-CoV-2 genome from short-read sequencing data via CoVpipe2 [version 1; peer review: 1 approved, 1 approved with reservations]

openaire   +1 more source

FranceGenRef: first steps towards a whole-genome reference panel grounded in French regional ancestral diversity

Génin E, Lindenbaum P, Delafoy D, Sandron F, Geoffroy V, Marenne G, Herzig A, Dina C, Meyer V, Olaso R, Redon R, DELEUZE J.   +11 more
europepmc   +1 more source

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Short report: genetic heterogeneity of Japanese encephalitis virus assessed via analysis of the full-length genome sequence of a Korean isolate.

The American journal of tropical medicine and hygiene, 2001
We determined the full-length genome sequence of Japanese encephalitis virus (JEV) K94P05 isolated in Korea. Sequence analysis showed that the 10,963-nucleotide-long RNA genome of K94P05 was 13 or 14 nucleotides shorter than the genome of other JEV isolates because of a deletion in the 3' noncoding region of K94P05. Compared with sequences of other JEV
J H, Nam, S L, Chae, S Y, Won, E J, Kim, K S, Yoon, B I, Kim, Y S, Jeong, H W, Cho   +7 more
openaire   +2 more sources

Optical genome mapping and revisiting short-read genome sequencing data reveal previously overlooked structural variants disrupting retinal disease−associated genes

Genetics in Medicine, 2023
Marcel Nelen, Suzanne de Bruijn, Tamar Ben-Yosef   +2 more
exaly  

The First Genome Survey and De Novo Assembly of the Short Mackerel (Rastrelliger brachysoma) and Indian Mackerel (Rastrelliger kanagurta)

Animals, 2022
Komwit Surachat, Monwadee Wonglapsuwan
exaly  

Polypolish: Short-read polishing of long-read bacterial genome assemblies

PLoS Computational Biology, 2022
Ryan Wick, Kathryn Holt
exaly  

The Application of Optical Genome Mapping (OGM) in Severe Short Stature Caused by Duplication of 15q14q21.3

Genes, 2023
Huijuan Zhu, Hui Pan
exaly  

Base Editing: The Ever Expanding Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) Tool Kit for Precise Genome Editing in Plants

Genes, 2020
Shakeel Ahmad, Xiangjin Wei, Peisong Hu   +2 more
exaly  

MicroRNAome genome: A treasure for cancer diagnosis and therapy

Ca-A Cancer Journal for Clinicians, 2014
Ioana Berindan Neagoe, George Calin, Barbara Pasculli   +2 more
exaly