Results 61 to 70 of about 106,975 (303)

Eucyclops serrulatus, transcriptome shotgun assembly

, 2015
Eucyclops serrulatus, transcriptome shotgun ...
Federica Cattonaro (158236), Iannilli, Valentina, Di Lorenzo, Tiziana, Baratti, Mariella, Vendramin, Giovanni Giuseppe, Alessio Iannucci (3319329), Dragos Postolache (3155778), Cattonaro, Federica, Tiziana Di Lorenzo (3319332), Mariella Baratti (3276168), Valentina Iannilli (3319338), Postolache, Dragos, Galassi, Diana Maria Paola, Giovanni Giuseppe Vendramin (454543), Iannucci, Alessio, Diana Maria Paola Galassi (3319335)   +15 more
core   +1 more source

Microbial‐Metabolite Signatures Are Associated With Glucocorticoid Responsiveness in Chronic Rhinosinusitis With Nasal Polyps

International Forum of Allergy &Rhinology, EarlyView.
ABSTRACT Background Patients with chronic rhinosinusitis with nasal polyps (CRSwNP) exhibit heterogeneous responses to oral glucocorticoids (GCs), but the biological basis of this variability remains unclear. Objective To identify gut microbiome‒plasma metabolomic signatures associated with GC responsiveness in CRSwNP patients and to compare their ...
Ying‐Ying Zhang, Xin‐Yu Ding, Mei‐Ping Lu, Yan‐Bing Chen, Ye Yuan, Lin Jiang, Min Zhang, Lei Cheng   +7 more
wiley   +1 more source

Exploration of fecal microbiota in newly diagnosed patients with inflammatory bowel disease using shotgun metagenomics

Frontiers in Cellular and Infection Microbiology
IntroductionDysbiosis is a key mechanism in inflammatory bowel disease (IBD) pathophysiology. Previous microbiota studies in IBD generally have involved patients treated with immunosuppressive agents, which can affect the results.
Macarena Orejudo, Manuel J. Gómez, Sabino Riestra, Montserrat Rivero, Ana Gutiérrez, Iago Rodríguez-Lago, Luis Fernández-Salazar, Daniel Ceballos, José Manuel Benítez, Mariam Aguas, Iria Bastón-Rey, Fernando Bermejo, María José Casanova, Rufo H. Lorente-Poyatos, Yolanda Ber, Daniel Ginard, María Esteve, Ruth de Francisco, María José García, Rubén Francés, Rubén Francés, Ainhoa Rodríguez, Noelia Alcaide Suárez, Elena Guerra del Río, Pilar Soto, Pilar Nos, Manuel Barreiro-de Acosta, Iván Guerra, Daniel Hervías Cruz, Manuel Domínguez Cajal, Vanesa Royo, Montserrat Aceituno, Laila Aldars-García, Ana Garre, Cristina Ramírez, Irene Soleto, Ina Schuppe-Koistinen, Lars Engstrand, Montse Baldán-Martín, Fátima Sánchez-Cabo, Javier P. Gisbert, María Chaparro   +41 more
doaj   +1 more source

Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota

Scientific Reports, 2021
In this paper we compared taxonomic results obtained by metataxonomics (16S rRNA gene sequencing) and metagenomics (whole shotgun metagenomic sequencing) to investigate their reliability for bacteria profiling, studying the chicken gut as a model system.
Francesco Durazzi, Claudia Sala, Gastone Castellani, Gerardo Manfreda, Daniel Remondini, Alessandra De Cesare   +5 more
doaj   +1 more source

Echinogammarus veneris, transcriptome shotgun assembly

, 2015
Echinogammarus veneris, transcriptome shotgun ...
Federica Cattonaro (158236), Iannilli, Valentina, Di Lorenzo, Tiziana, Baratti, Mariella, Vendramin, Giovanni Giuseppe, Alessio Iannucci (3319329), Dragos Postolache (3155778), Cattonaro, Federica, Tiziana Di Lorenzo (3319332), Mariella Baratti (3276168), Valentina Iannilli (3319338), Postolache, Dragos, Galassi, Diana Maria Paola, Giovanni Giuseppe Vendramin (454543), Iannucci, Alessio, Diana Maria Paola Galassi (3319335)   +15 more
core   +1 more source

Longitudinal Modulation of the Gut Microbiome and Growth Performance by Phytochemicals as Antibiotic Alternatives in Swine Production

Animal Research and One Health, EarlyView.
We conducted a longitudinal trial across nursery, growing, and finishing phases, showing that phytochemical supplementation as a potential antibiotic alternative reduced potential pathogens and promoted beneficial Lactobacillus amylovorus in the nursery phase, and enriched amino acid and carbohydrate metabolism pathways (prediction) during finishing ...
Ziyu Liu, Samantha Howe, Yang Tian, Alisun N. Watson, Jason E. Farrar, Christopher E. Randolph, Jaime Andrés Ángel Isaza, Álvaro José Uribe, Yan Huang, Michael Looper, Jiangchao Zhao, Tsungcheng Tsai   +11 more
wiley   +1 more source

An improvement of shotgun proteomics analysis by adding next-generation sequencing transcriptome data in orange. [PDF]

PLoS ONE, 2012
BACKGROUND: Shotgun proteomics data analysis usually relies on database search. Because commonly employed protein sequence databases of most species do not contain sufficient protein information, the application of shotgun proteomics to the research of ...
Jiaping Song, Renjie Sun, Dazhi Li, Fengji Tan, Xin Li, Pingping Jiang, Xinjie Huang, Liang Lin, Ziniu Deng, Yong Zhang   +9 more
doaj   +1 more source

Optimizing Efficacy to Safety Ratio of Glucocorticoids in Rheumatoid Arthritis Models by Leveraging Peroxisome Proliferator–Activated Nuclear Receptor‐α Agonism

Arthritis &Rheumatology, EarlyView.
Objective Glucocorticoids remain essential therapies for immune and inflammatory diseases such as rheumatoid arthritis (RA) but are notorious for their metabolic side effects. Given the anti‐inflammatory and metabolically favorable actions of peroxisome proliferator–activated nuclear receptor (PPAR) agonists, we investigated whether PPARα agonism could
Lisa L. Koorneef, Elisabeth Gilis, Dorien Clarisse, Daria Fijalkowska, Sara Dufour, Julie Coudeneys, Bert Luyckx, Annick Verhee, Jonathan Thommis, Candice Vanden Bussche, Ulf Müller‐Ladner, Elena Neumann, Matthias Kerkhofs, Guillaume Planckaert, Simon Devos, Leander Meuris, Dirk Elewaut, Karolien De Bosscher   +17 more
wiley   +1 more source

Replica exchange improves sampling in low-resolution docking stage of RosettaDock. [PDF]

PLoS ONE, 2013
Many protein-protein docking protocols are based on a shotgun approach, in which thousands of independent random-start trajectories minimize the rigid-body degrees of freedom. Another strategy is enumerative sampling as used in ZDOCK.
Zhe Zhang, Oliver F Lange
doaj   +1 more source

Advanced In Vitro Platforms for Experimental Liver Research: From Organoids and Liver‐on‐Chip to Omics and Artificial Intelligence

Biotechnology and Bioengineering, EarlyView.
ABSTRACT Hepatocytes perform essential physiological functions in the human body. Gaining more profound insight into the liver structure, diseases, and physiology by using in vitro models can help to propose more relevant clinical applications. Conventional in vitro liver models, such as two‐dimensional (2D) cell cultures, fail to adequately replicate ...
Seyedeh Kiana Teymorian, Pedram Asadi Sarabi, Abbas Piryaei, Massoud Vosough   +3 more
wiley   +1 more source