Results 81 to 90 of about 912,053 (206)

Deducing genotypes for loci of interest from SNP array data via haplotype sharing, demonstrated for apple and cherry.

PLoS ONE, 2023
Breeders, collection curators, and other germplasm users require genetic information, both genome-wide and locus-specific, to effectively manage their genetically diverse plant material.
Alexander Schaller, Stijn Vanderzande, Cameron Peace   +2 more
doaj   +1 more source

SNPchip: R classes and methods for SNP array data [PDF]

Bioinformatics, 2007
AbstractSummary: High-density single nucleotide polymorphism microarrays (SNP chips) provide information on a subject's genome, such as copy number and genotype (heterozygosity/homozygosity) at a SNP. While fluorescence in situ hybridization and karyotyping reveal many abnormalities, SNP chips provide a higher resolution map of the human genome that ...
Robert B. Scharpf, Jason C. Ting, Jonathan Pevsner, Ingo Ruczinski   +3 more
openaire   +3 more sources

SNP-analysis.xlsx

, 2019
SNP analysis across ...
Mohammad Hamidian (2890205)
core   +1 more source

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos) [PDF]

, 2011
Background Next generation sequencing technologies allow to obtain at low cost the genomic sequence information that currently lacks for most economically and ecologically important organisms. For the mallard duck genomic data is limited. The mallard is,
Kerstens Hindrik HD, van Hooft, W.F., van der Poel, J.J., Prins, Herbert HT, Robert HS Kraus, van Hooft, Pim, Kraus, R.H.S., Prins, Herbert H. T., Prins, H.H.T., Poel, J., Van Hooft Pim, Hooft, Pim Van, Li Ning, Jan J Van Der Poel, Johan Elmberg, Huang Yinhua, Prins Herbert HT, Elmberg, Johan, Vignal Alain, Martien AM Groenen, Crooijmans, Richard P. M. A., Elmberg Johan, Groenen, M.A.M., van Hooft, Pim,, Van Der Poel Jan J, Huang, Y., Kraus, Robert Hs, Pim Van Hooft, Vignal, Alain, Crooijmans, R.P.M.A., Yinhua Huang, Groenen, Martien A. M., Vignal, Alain,, Li, N., Crooijmans, R., Kerstens, H., Crooijmans, Richard P. M. A.,, Herbert HT Prins, Elmberg, J., Groenen, M., Kerstens, Hindrik HD, Elmberg, Johan,, Kraus, Robert, Groenen, Martien AM, Prins, Herbert H. T.,, Kraus Robert HS, Prins, H., Huang, Yinhua,, Groenen Martien AM, Poel, J.J., van der, Kersten, H.H.D., van der Poel, Jan J., Li, Ning, Kraus, Robert H. S.,, Kraus, Robert H. S., Huang, Yinhua, Hooft, W.F., van, Crooijmans, Richard PMA, Kerstens, Hindrik H. D.,, Kerstens, Hindrik H. D., Li, Ning,, Hooft, P., Hindrik HD Kerstens, Richard PMA Crooijmans, Vignal, A., Alain Vignal, Kraus, R., Groenen, Martien A. M.,, Ning Li, Crooijmans Richard PMA, van der Poel, Jan J.,   +70 more
core   +2 more sources

Choroid Plexus Cysts: Single Nucleotide Polymorphism Array Analysis of Associated Genetic Anomalies and Resulting Obstetrical Outcomes

Risk Management and Healthcare Policy, 2021
Meiying Cai,* Hailong Huang,* Linjuan Su, Xiaoqing Wu, Xiaorui Xie, Liangpu Xu, Na Lin Medical Genetic Diagnosis and Therapy Center, Fujian Maternity and Child Health Hospital, Affiliated Hospital of Fujian Medical University, Fujian Key Laboratory for ...
Cai M, Huang H, Su L, Wu X, Xie X, Xu L, Lin N   +6 more
doaj  

A new chicken 55K SNP genotyping array

BMC Genomics, 2019
Background China has the richest local chicken breeding resources in the world and is the world’s second largest producer of meat-type chickens. Development of a moderate-density SNP array for genetic analysis of chickens and breeding of meat-type ...
Ranran Liu, Siyuan Xing, Jie Wang, Maiqing Zheng, Huanxian Cui, Richard P. M. A. Crooijmans, Qinghe Li, Guiping Zhao, Jie Wen   +8 more
doaj   +1 more source

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel [PDF]

, 2008
BACKGROUND: The extent of linkage disequilibrium (LD) within a population determines the number of markers that will be required for successful association mapping and marker-assisted selection.
Andrew R Collins, Zenger, Kyall R., Jeremy F Taylor, Zenger Kyall R, Frank W Nicholas, Cavanagh Julie AL, Taylor, Jeremy F., Barris Wes, Wes Barris, Taylor Jeremy F, Kyall R Zenger, Barris, Wes, Nicholas, Frank W., Julie AL Cavanagh, Schnabel Robert D, Collins, Andrew R., Raadsma Herman W, Raadsma, Herman W., Nicholas Frank W, Herman W Raadsma, Khatkar, Mehar S., Khatkar Mehar S, Collins Andrew R, Nicholas, Mehar S., Cavanagh, Julie A.L., Robert D Schnabel, Mehar S Khatkar, Schnabel, Robert D.   +27 more
core   +1 more source

Design of a Bovine Low-Density SNP Array Optimized for Imputation

PLoS ONE, 2012
The Illumina BovineLD BeadChip was designed to support imputation to higher density genotypes in dairy and beef breeds by including single-nucleotide polymorphisms (SNPs) that had a high minor allele frequency as well as uniform spacing across the genome except at the ends of the chromosome where densities were increased. The chip also includes SNPs on
Didier Boichard, Hoyoung Chung, Romain Dassonneville, Xavier David, André Eggen, Sébastien Fritz, Kimberly J Gietzen, Ben J Hayes, Cynthia T Lawley, Tad S Sonstegard, Curtis P Van Tassell, Paul M VanRaden, Karine A Viaud-Martinez, George R Wiggans, Bovine LD Consortium   +14 more
openaire   +8 more sources

SNP Array Details

Table of information on SNP loci used in Sitka spruce SNP array with data on sequence and previous mapping in white spruce.
Hayley Tumas (17735943)
core   +1 more source

Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis

PLoS Computational Biology, 2005
Amplification, deletion, and loss of heterozygosity of genomic DNA are hallmarks of cancer. In recent years a variety of studies have emerged measuring total chromosomal copy number at increasingly high resolution. Similarly, loss-of-heterozygosity events have been finely mapped using high-throughput genotyping technologies.
Thomas LaFramboise, Barbara A. Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li 0016, David Harrington, William R. Sellers, Matthew Meyerson   +7 more
openaire   +7 more sources