Results 101 to 110 of about 912,053 (206)

Utility of the pooling approach as applied to whole genome association scans with high-density Affymetrix microarrays. [PDF]

, 2010
Background: We report an attempt to extend the previously successful approach of combining SNP (single nucleotide polymorphism) microarrays and DNA pooling (SNP-MaP) employing high-density microarrays.
Farmer, A., Pirlo Katrina, Farmer, Anne E, Gray, J, Jones, L, Emma Meaburn (27672), Ian W Craig (16171385), Gaysina, D, Ian W Craig, Emma Meaburn, Craig, I., Korszun Ania, Cohen-Woods Sarah, Gray Joanna, Cohen-Woods, Sarah, Schalkwyk, L.C., McGuffin Peter, Darya Gaysina, Craig, Ian W, Farmer, AE, Schosser, A, Gray, J., Elkin, Amanda, Schalkwyk, L., Gray, Joanna, Craig, IW, Schalkwyk Leonard C, Schosser Alexandra, Lisa Jones (98953), Gunasinghe, C, Sarah Cohen-Woods (214940), Pirlo, K., Craig, I.W., Jones Lisa, Alexandra Schosser (214931), Gaysina Darya, Cerisse Gunasinghe (16171376), Schosser, Alexandra, McGuffin, P., Meaburn Emma, Meaburn, E., Amanda Elkin, Leonard C Schalkwyk, Alexandra Schosser, Ania Korszun (214946), Anne E Farmer, Joanna Gray, Lisa Jones, McGuffin, P, Pirlo, Katrina, Elkin Amanda, Katrina Pirlo, Gaysina, Darya, Schosser, A., Elkin, A., Schalkwyk, LC, Korszun, A., Peter McGuffin, Gunasinghe, Cerisse, Amanda Elkin (16049114), Craig Ian W, Sarah Cohen-Woods, Joanna Gray (16171373), Anne E Farmer (10497512), Farmer Anne E, Gaysina, Daria, Ania Korszun, Pirlo, K, Gunasinghe, C., Peter McGuffin (51507), Meaburn, Emma L., Elkin, A, Katrina Pirlo (14918094), Gaysina, D., Cerisse Gunasinghe, Korszun, A, Farmer, A.E., McGuffin, Peter, Korszun, Ania, Jones, Lisa, Leonard C Schalkwyk (8412954), Cohen-Woods, S, McGuffin, Peter W, Meaburn, E, Darya Gaysina (4464832), Schalkwyk, Leonard C, Cohen-Woods, S., Gunasinghe Cerisse, Jones, L., Gunasinghe, Cerisse; id_orcid, Meaburn, Emma   +90 more
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Similarity Measures for Clustering SNP and Epidemiological Data [PDF]

The issue of suitable similarity measures for a joint consideration of so called SNP data and epidemiological variables arises from the GENICA (Interdisciplinary Study Group on Gene Environment Interaction and Breast Cancer in Germany) casecontrol study ...
Selinski, Silvia
core  

SNP-bis

, 2012
SNP ...
Scotti-Saintagne, Caroline, Audigeos, Delphine, Caroline Scotti-Saintagne (202715), Louise Brousseau (710194), Ivan Scotti (151281), Brousseau, Louise, Delphine Audigeos (3292611), Scotti, Ivan, Stéphane Traissac (3292614), Traissac, Stéphane   +9 more
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Construction of a versatile SNP array for pyramiding useful genes of rice

Plant Science, 2016
La sélection assistée par marqueur d'ADN (Mas) est devenue un élément indispensable de la sélection. Les polymorphismes mononucléotidiques (SNP) sont les polymorphismes les plus fréquents dans le génome du riz. Cependant, les marqueurs SNP ne sont pas facilement utilisés dans le MAS en raison des limitations des plates-formes de génotypage.
Yusuke Kurokawa, Tomonori Noda, Yoshiyuki Yamagata, Rosalyn B. Angeles‐Shim, Hidehiko Sunohara, Kanako Uehara, Tomohisa Furuta, Keisuke Nagai, Kshirod K. Jena, Hirofumi Yasui, Atsushi Yoshimura, Motoyuki Ashikari, Kouki Doi   +12 more
openaire   +2 more sources

SNP array analysis and interpretation

, 2018
Genome wide high resolution SNP-based array analysis has been used in our laboratory for the detection of copy number variations (CNVs) as a first tier diagnostic test since 2009 for patients with intellectual disability (ID) and/or congenital anomalies.
Leeuw, Nicole de
core  

SNP array analysis in hematologic malignancies: avoiding false discoveries

Blood, 2010
Comprehensive analysis of the cancer genome has become a standard approach to identifying new disease loci, and ultimately will guide therapeutic decisions. A key technology in this effort, single nucleotide polymorphism arrays, has been applied in hematologic malignancies to detect deletions, amplifications, and loss of heterozygosity (LOH) at high ...
Stefan, Heinrichs, Cheng, Li, A Thomas, Look   +2 more
openaire   +3 more sources

Schema of methylation-sensitive SNP array.

, 2018
If allele-specific DNA methylation (ASM) around heterozygous SNP A/C exists (which is hypermethylated around A allele and hypomethylated around C allele), SNP is called A/C in micro array before digestion and A/A after digestion by MSREs.
Kazuhiro Watanabe (495442), Masao Nagasaki (133852), Yoichi Kakuta (2541478), Michiaki Unno (518981), Munenori Nagao (4971712), Masatake Kuroha (4971703), Tooru Shimosegawa (209256), Hisashi Shiga (4971706), Yoshitaka Kinouchi (4971700), Kenichi Negoro (4971709), Motoyuki Onodera (4971721), Tomoya Kimura (1519888), Yoshitake Kanazawa (4971718), Takeo Naito (4971715), Katsuya Endo (4167463), Rintaro Moroi (4971697), Yosuke Kawai (154753), Hirofumi Chiba (4897168)   +17 more
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Imputing missing genotypes with weighted k nearest neighbors [PDF]

Motivation: Missing values are a common problem in genetic association studies concerned with single nucleotide polymorphisms (SNPs). Since most statistical methods cannot handle missing values, they have to be removed prior to the actual analysis ...
Schwender, Holger, Ickstadt, Katja
core  

A reference haplotype panel for genome-wide imputation of short tandem repeats

Nature Communications, 2018
Short-tandem repeats (STR), similar to single nucleotide polymorphisms (SNP), contribute to complex traits, but their ascertainment by next-generation sequencing is costly. Here, Saini et al.
Shubham Saini, Ileena Mitra, Nima Mousavi, Stephanie Feupe Fotsing, Melissa Gymrek   +4 more
doaj   +1 more source

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays [PDF]

, 2007
Motivation: Modern strategies for mapping disease loci require efficient genotyping of a large number of known polymorphic sites in the genome. The sensitive and high-throughput nature of hybridization-based DNA microarray technology provides an ideal ...
Yeh, Ru-Fang, Yang, Jean YH, Xiao, Yuanyuan, Segal, Mark R   +3 more
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